CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90725
CDY05064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	CDX90725	AT4G09570.1	19130088
AT5G50920.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84888	Canola	cytosol	89.58	99.76
GSMUA_Achr6P08050_001	Banana	cytosol	13.57	98.43
Bra022751.1-P	Field mustard	plastid	99.24	98.39
AT5G50920.1	Thale cress	plastid	96.96	96.12
CDY64710	Canola	cytosol	82.19	92.09
GSMUA_Achr6P08040_001	Banana	cytosol	62.87	89.91
Os04t0397100-01	Rice	plastid	38.22	87.34
Solyc12g042060.1.1	Tomato	plastid	87.51	87.32
PGSC0003DMT400037527	Potato	cytosol	87.41	87.22
KRH59753	Soybean	endoplasmic reticulum	86.43	86.62
KRH54115	Soybean	plastid	86.64	86.55
GSMUA_Achr3P18630_001	Banana	plastid	84.8	86.49
KRH63851	Soybean	plastid	86.54	86.44
PGSC0003DMT400036961	Potato	plastid	86.43	86.05
KRH41069	Soybean	mitochondrion, plastid	85.78	85.96
Solyc03g118340.2.1	Tomato	nucleus	86.21	85.75
CDY05878	Canola	mitochondrion	86.64	85.62
CDX68504	Canola	mitochondrion	86.21	85.56
CDX83052	Canola	mitochondrion	85.99	85.44
PGSC0003DMT400054236	Potato	plastid	83.93	84.95
TraesCS6A01G195200.1	Wheat	plastid	84.04	84.5
TraesCS6B01G233800.1	Wheat	plastid	83.93	84.39
TraesCS6D01G183600.2	Wheat	cytosol, plastid	83.93	84.39
GSMUA_Achr6P16470_001	Banana	plastid	80.24	84.36
Zm00001d003894_P004	Maize	plastid	84.04	84.04
Zm00001d025273_P019	Maize	plastid	83.93	83.93
HORVU2Hr1G071080.3	Barley	plastid	83.5	83.86
EES12052	Sorghum	plastid	83.82	83.82
TraesCS2D01G285800.1	Wheat	plastid	83.39	83.75
TraesCS2B01G304200.1	Wheat	golgi	83.39	83.75
TraesCS2A01G287300.2	Wheat	plastid	81.0	83.35
Zm00001d024009_P001	Maize	plastid	83.06	83.06
KXG23307	Sorghum	plastid	82.84	82.84
Os12t0230100-01	Rice	plastid	82.63	82.81
TraesCS5A01G118900.1	Wheat	unclear	82.63	82.72
TraesCS5D01G118700.1	Wheat	plastid	82.52	82.61
TraesCS5B01G112500.1	Wheat	plastid	82.41	82.5
GSMUA_Achr8P09160_001	Banana	plastid	82.19	81.93
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	87.19	81.86
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	81.98	77.6
TraesCS4B01G082900.1	Wheat	mitochondrion	51.57	63.08
GSMUA_AchrUn_...	Banana	plastid	78.61	61.83
CDY64721	Canola	cytosol	11.94	45.08
CDX73074	Canola	cytosol	35.07	43.47
CDX96531	Canola	cytosol	34.96	43.34
CDX85552	Canola	cytosol	11.94	43.14
CDY53470	Canola	mitochondrion	37.02	43.0
CDY38846	Canola	plastid	43.32	42.86
CDY32646	Canola	plastid	43.43	42.83
CDX71686	Canola	plastid	43.21	42.7
CDY68892	Canola	mitochondrion, plastid	37.46	41.62
CDX68190	Canola	nucleus	36.16	40.86
CDY56280	Canola	mitochondrion	42.24	39.94
CDX90991	Canola	plastid	41.69	39.83
CDX76768	Canola	mitochondrion	42.02	39.77
CDX85823	Canola	nucleus	38.0	39.64
CDX69524	Canola	plastid	41.26	39.05
CDY26423	Canola	plastid	41.26	39.05
CDX85551	Canola	plastid	25.52	35.93

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	GO:A0A078I4J7	UniProt:A0A078I4J7
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	EnsemblPlants:CDY45800	ProteinID:CDY45800	ProteinID:CDY45800.1	InterPro:ClpA/B
InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507
GO:GO:0009536	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00082732001	InterPro:IPR001943	InterPro:IPR036628	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02151	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300
ScanProsite:PS00870	ScanProsite:PS00871	PFscan:PS50151	PFscan:PS51257	PANTHER:PTHR43572	PANTHER:PTHR43572:SF8
SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI0004EF0C67	InterPro:UVR_dom
SEG:seg	:	:	:	:	:

Description

BnaC03g16230DBnaC03g16230D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4J7]

Coordinates

chrLK032637:+:48518..52807

Molecular Weight (calculated)

102064.0 Da

IEP (calculated)

7.199

GRAVY (calculated)

-0.384

Length

921 amino acids

Sequence
(BLAST)

001: MAMATRVMSQ STPLSLACSQ RNAPSRGSGS SKRSVKMMCT QLQVSGSSRM QGFLGLRGNN ALDTLGRSRQ SFGGKVRHAM NVPKGKGSRG VVKAMFERFT
101: EKAIKVIMLA QEEARRLGHN FVGTEQILLG LIGEGTGIAA KVLKSMGINL KDARVEVEKI IGRGSGFVAV EIPFTPRAKR VLELSLEEAR QLGHNYIGSE
201: HLLLGLLREG EGVAARVLEN LGADPSNIRT QVIRMVGENN EVTANVGGGS GSNKMPTLEE YGTNLTKMAE EGKLDPVVGR QPQIERVVQI LGRRTKNNPC
301: LIGEPGVGKT AIAEGLAQRI ASGDVPETIE GKKVITLDMG LLVAGTKYRG EFEERLKKLM EEIKQSDEII LFIDEVHTLI GAGAAEGAID AANILKPALA
401: RGELQCIGAT TLDEYRKHIE KDPALERRFQ PVKVPEPTVD ETIQILKGLR ERYEIHHKLR YTDESLVAAA QLSYQYISDR FLPDKAIDLI DEAGSRVRLR
501: HAQVPEEARE LEKELRQITK EKNEAVRGQD FEKAGTLRDR EIELRAEVSA IQAKGKEMSK AESETGEEGP MVTESDIQHI VSSWTGIPVE KVSTDESDRL
601: LKMEETLHKR VVGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKALA AYYFGSEEAM IRLDMSEFME RHTVSKLIGS PPGYVGYTEG
701: GQLTEAVRRR PYTVVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIDSSYNRI KSLVTEELKQ YFRPEFLNRL
801: DEMIVFRQLT KLEVKEIADI LLQEVFERLK KKEIELQVTE RFRERVVDEG YNPSYGARPL RRAIMRLLED SMAEKMLARE IKEGDSVIVD VDSEGKVTVL
901: NGGSGTPTTS LEEQEDSLPV A

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.