CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	KRG91803	AT4G09570.1	19130088
AT5G50920.1	KRH34983	AT4G09570.1	19130088
AT5G50920.1	KRH34984	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54115	Soybean	plastid	98.92	98.92
GSMUA_Achr6P08050_001	Banana	cytosol	13.45	97.64
KRH59753	Soybean	endoplasmic reticulum	93.06	93.36
CDX84888	Canola	cytosol	83.3	92.87
KRH41069	Soybean	mitochondrion, plastid	92.19	92.49
GSMUA_Achr6P08040_001	Banana	cytosol	64.43	92.24
CDY64710	Canola	cytosol	80.59	90.39
Os04t0397100-01	Rice	plastid	39.48	90.32
Solyc12g042060.1.1	Tomato	plastid	89.91	89.82
PGSC0003DMT400037527	Potato	cytosol	89.8	89.71
GSMUA_Achr3P18630_001	Banana	plastid	87.31	89.15
Solyc03g118340.2.1	Tomato	nucleus	89.26	88.88
PGSC0003DMT400036961	Potato	plastid	88.94	88.65
PGSC0003DMT400054236	Potato	plastid	86.55	87.69
AT5G50920.1	Thale cress	plastid	87.85	87.19
Bra022751.1-P	Field mustard	plastid	87.64	86.98
GSMUA_Achr6P16470_001	Banana	plastid	82.43	86.76
Zm00001d003894_P004	Maize	plastid	86.66	86.75
EES12052	Sorghum	plastid	86.55	86.64
Zm00001d025273_P019	Maize	plastid	86.55	86.64
CDY45800	Canola	plastid	86.44	86.54
Bra018030.1-P	Field mustard	mitochondrion	83.3	86.49
TraesCS6A01G195200.1	Wheat	plastid	85.79	86.35
TraesCS6D01G183600.2	Wheat	cytosol, plastid	85.68	86.24
TraesCS6B01G233800.1	Wheat	plastid	85.68	86.24
HORVU2Hr1G071080.3	Barley	plastid	85.68	86.15
TraesCS2D01G285800.1	Wheat	plastid	85.47	85.93
TraesCS2B01G304200.1	Wheat	golgi	85.47	85.93
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	91.11	85.63
TraesCS2A01G287300.2	Wheat	plastid	83.08	85.59
CDX68504	Canola	mitochondrion	85.79	85.24
Os12t0230100-01	Rice	plastid	84.92	85.2
KXG23307	Sorghum	plastid	85.03	85.12
Bra029922.1-P	Field mustard	mitochondrion	85.57	85.02
Zm00001d024009_P001	Maize	plastid	84.82	84.91
CDX83052	Canola	mitochondrion	85.36	84.9
CDY05878	Canola	mitochondrion	85.47	84.55
GSMUA_Achr8P09160_001	Banana	plastid	83.84	83.66
TraesCS5D01G118700.1	Wheat	plastid	83.41	83.59
TraesCS5A01G118900.1	Wheat	unclear	83.41	83.59
TraesCS5B01G112500.1	Wheat	plastid	83.3	83.48
AT3G48870.3	Thale cress	cytosol, plastid	84.92	82.25
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	83.3	78.93
KRH46928	Soybean	endoplasmic reticulum	8.46	65.55
TraesCS4B01G082900.1	Wheat	mitochondrion	52.71	64.54
GSMUA_AchrUn_...	Banana	plastid	80.69	63.54
KRH63249	Soybean	mitochondrion	10.41	49.48
KRH63903	Soybean	plastid	45.12	43.97
KRH54048	Soybean	plastid	44.69	43.37
KRH52355	Soybean	cytosol, mitochondrion	30.59	43.32
KRH03117	Soybean	cytosol	21.26	43.17
KRH54672	Soybean	endoplasmic reticulum	34.27	41.97
KRH01254	Soybean	nucleus, plastid	43.49	41.17
KRH61688	Soybean	mitochondrion	43.38	41.07
KRH18417	Soybean	nucleus	43.49	41.0
KRG93616	Soybean	nucleus	43.28	40.8
KRH44979	Soybean	nucleus, plastid	42.95	40.66
KRH56831	Soybean	endoplasmic reticulum	39.26	39.74

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	EntrezGene:100796195	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	Gene3D:4.10.860.10
InterPro:AAA+_ATPase	EMBL:ACUP02002719	InterPro:ATPase_AAA_core	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2
InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	EnsemblPlantsGene:GLYMA_04G200400	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152
GO:GO:0019538	UniProt:I1JXP9	InterPro:IPR001943	InterPro:IPR036628	EnsemblPlants:KRH63851	ProteinID:KRH63851
ProteinID:KRH63851.1	ProteinID:KRH63852.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02151	PFAM:PF02861
PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PFscan:PS50151
PANTHER:PTHR43572	PANTHER:PTHR43572:SF8	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923
UniParc:UPI00023394FE	InterPro:UVR_dom	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:47289448..47296916

Molecular Weight (calculated)

102560.0 Da

IEP (calculated)

6.495

GRAVY (calculated)

-0.349

Length

922 amino acids

Sequence
(BLAST)

001: MARVLAQSIN VPGLLAEHRH GQQKESGKLK RSTKMMSALR TNGLRMSGFS GLRTFNPLDT MLRPGIDFHS KVSIATSSRR ARATRCVPKA MFERFTEKAI
101: KVIMLAQEEA RRLGHNFVGT EQILLGLIGE GTGIAAKVLK SMGINLKDAR VEVEKIIGRG SGFVAVEIPF TPRAKRVLEL SLEEARQLGH NYIGSEHLLL
201: GLLREGEGVA ARVLENLGAD PTNIRTQVIR MVGESADSVT ATVGSGSSGN KMPTLEEYGT NLTKLAEEGK LDPVVGRQPQ IERVTQILGR RTKNNPCLIG
301: EPGVGKTAIA EGLAQRIANG DVPETIEGKK VITLDMGLLV AGTKYRGEFE ERLKKLMEEI KQSDEIILFI DEVHTLIGAG AAEGAIDAAN ILKPALARGE
401: LQCIGATTLD EYRKHIEKDP ALERRFQPVK VPEPTVDETI QILKGLRERY EIHHKLRYTD EALVAAAQLS YQYISDRFLP DKAIDLIDEA GSRVRLQHAQ
501: LPEEARELDK EVRQIIKEKE EAVRNQDFEK AGELRDREMD LKAQISTLVE KGKEMSKAES EAGDASPVVT EADIQHIVSS WTGIPVEKVS TDESDRLLKM
601: EETLHKRVIG QDEAVKAISR AIRRARVGLK NPNRPIASFI FSGPTGVGKS ELAKALAAYY FGSEEAMIRL DMSEFMERHT VSKLIGSPPG YVGYTEGGQL
701: TEAVRRRPYT VVLFDEIEKA HPDVFNMMLQ ILEDGRLTDS KGRTVDFKNT LLIMTSNVGS SVIEKGGRKI GFDLDYDEKD SSYNRIKSLV TEELKQYFRP
801: EFLNRLDEMI VFRQLTKLEV KEIADIMLKE VFERLKVKDI ELQVTERFRD RVVEEGYNPS YGARPLRRAI MRLLEDSMAE KMLAREIKEG DSVIVDVDSD
901: GNVIVLNGSS GAPESLPEAL PV

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.