CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51070.1	KRH10294	AT3G46090.1	17259181
AT5G51070.1	KRH23029	AT3G46090.1	17259181
AT5G51070.1	KRH24840	AT3G46090.1	17259181
AT5G51070.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63903	Soybean	plastid	95.79	96.19
VIT_19s0014g00020.t01	Wine grape	plastid	63.89	64.16
GSMUA_Achr6P23780_001	Banana	cytosol	57.05	64.14
CDY38846	Canola	plastid	62.21	63.48
CDY32646	Canola	plastid	62.11	63.17
OQU81478	Sorghum	cytosol	56.42	62.98
AT5G51070.1	Thale cress	plastid	62.63	62.96
Bra029193.1-P	Field mustard	plastid	62.42	62.88
CDX71686	Canola	plastid	61.37	62.55
HORVU5Hr1G081860.1	Barley	cytosol	49.89	62.04
Os02t0526400-01	Rice	cytosol, plasma membrane	52.95	61.19
Solyc03g117950.2.1	Tomato	nucleus	61.58	60.68
PGSC0003DMT400036893	Potato	plastid	61.58	60.62
Zm00001d003847_P001	Maize	plastid	58.95	60.09
HORVU2Hr1G072020.5	Barley	plastid	52.21	59.47
TraesCS5A01G321300.1	Wheat	plastid	56.95	58.42
TraesCS5B01G321800.1	Wheat	plastid	56.95	58.36
TraesCS2B01G307500.1	Wheat	plastid	57.68	58.05
Zm00001d016664_P001	Maize	plastid	57.79	57.97
TraesCS2D01G289100.1	Wheat	plastid	57.58	57.82
TraesCS5D01G328100.1	Wheat	plastid	56.53	57.74
TraesCS2A01G291100.1	Wheat	plastid	57.47	57.72
EES05165	Sorghum	plastid	58.11	57.68
KRH46928	Soybean	endoplasmic reticulum	6.53	52.1
GSMUA_Achr10P...	Banana	plastid	54.32	52.07
KRH63249	Soybean	mitochondrion	9.79	47.94
KRH59753	Soybean	endoplasmic reticulum	43.37	44.83
KRH63851	Soybean	plastid	43.37	44.69
KRH54115	Soybean	plastid	43.26	44.58
KRH41069	Soybean	mitochondrion, plastid	42.84	44.29
KRH54672	Soybean	endoplasmic reticulum	29.58	37.32
KRH52355	Soybean	cytosol, mitochondrion	25.47	37.17
KRH01254	Soybean	nucleus, plastid	37.16	36.24
KRG93616	Soybean	nucleus	37.26	36.2
KRH18417	Soybean	nucleus	37.16	36.09
KRH44979	Soybean	nucleus, plastid	36.95	36.04
KRH56831	Soybean	endoplasmic reticulum	33.79	35.24
KRH03117	Soybean	cytosol	16.63	34.8
KRH61688	Soybean	mitochondrion	34.84	33.98

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	EntrezGene:100793074	MapMan:19.4.2.9.5	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
EMBL:ACUP02003491	InterPro:ATPase_AAA_core	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C
InterPro:Clp_N	InterPro:Clp_N_dom_sf	EnsemblPlantsGene:GLYMA_06G162200	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0008150	GO:GO:0008152	GO:GO:0019538	UniProt:I1KBU6	InterPro:IPR036628
EnsemblPlants:KRH54048	ProteinID:KRH54048	ProteinID:KRH54048.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861
PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR43572
PANTHER:PTHR43572:SF20	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI000233A5E1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:13391973..13398347

Molecular Weight (calculated)

104250.0 Da

IEP (calculated)

8.528

GRAVY (calculated)

-0.173

Length

950 amino acids

Sequence
(BLAST)

001: MQVSSSWFGT IVLSNRYSRN RSLPLEPCST TTTSSVSATS YPPLFTRPYS SLSFLVSQRK GFTLTSLSPI RTNKKRRRAS LRVSAVFERF TERAIKAIVL
101: SQREAKALGS ELVYTQHLLL GLIAEEDRSS DGFLASGVTV EKAREVVRSV WLRNGSARAG SGAARAGVDD DGSKASATQV PFSVNAKRVF EAAFEYSKSL
201: GHKFVGPEHI TVGLVKVDDG SVSRVLYRLG TNGSQLASVA FSRLQKEIAK DGREPNVISK GVPNKSISRK GSDAGASATT GEESALSQFC VDLTARASEG
301: RIDPVVGREV EVQRIIQILC RKTKSNPILL GEAGVGKTAI AEGMALRIAK ADVAPFLLTK RVMSLDIALL MAGAKERGEL EERVTKLVKD IIKSGDVILF
401: IDEVHILVQA GTIGRGNKGS GLDIANLLKP ALGRGQFQCI ASTTLDEYRL YFEKDTALAR RFQPVWVDEP SEDDAIKILM GLREKYEAHH KCRYTAEAIK
501: AAVDLSARYI VDRYLPDKAI DLIDEAGSRA CIEAFKKKKE HETGILSKCP ADYWQEIKDV KSMHEMENKL KYYGASSIDD TNELILDSYL SSTTTDNEPI
601: EVGPEDIAAV ASLWSGIPVQ KLTADQRILL LDLENQLRKR VIGQEEAVAA ISRAVKRSRV GLKDPDRPIA AMLFCGPTGV GKTELAKSLA ACYFGSEAAM
701: VRLDMSEYME RHTVSKLIGS PPGYVGYGEG GVLTEAIRRK PFTLLLLDEI EKAHPDIFNI LLQILEDGQL TDSQGRRVSF KNALVVMTSN VGSSAIAKGR
801: HNSIGFLIPD DKTTSYNGLK SMVIEELRSY FRPELLNRID EVVVFQPLEK SQLLQILDLL LQDMKKRVLS LGVHVKVSEA VKNLVCQQGY NPTYGARPLR
901: RAITSLIEDP LSEAFLYGEC KQGDTVLIDL DANGNPFVTN QLDQIVNLSD

Best Arabidopsis Sequence Match ( AT5G51070.1 )
(BLAST)

001: MEVLSTSSPL TLHSHRLLSA SSSSSHVTSI AASSLSSFAS SYLGISLSNR TIHRFSTTPT NLRRFPQRKR KKFTPISAVF ERFTERAIRA IIFSQKEAKS
101: LGKDMVYTQH LLLGLIAEDR DPQGFLGSGI TIDKAREAVW SIWDEANSDS KQEEASSTSY SKSTDMPFSI STKRVFEAAV EYSRTMDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PSSSSKGSFE SPPSGRIAGS GPGGKKAKNV LEQFCVDLTA RASEGLIDPV IGREKEVQRV
301: IQILCRRTKN NPILLGEAGV GKTAIAEGLA ISIAEASAPG FLLTKRIMSL DIGLLMAGAK ERGELEARVT ALISEVKKSG KVILFIDEVH TLIGSGTVGR
401: GNKGSGLDIA NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LINEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL
501: PDKAIDLIDE AGSRARIEAF RKKKEDAICI LSKPPNDYWQ EIKTVQAMHE VVLSSRQKQD DGDAISDESG ELVEESSLPP AAGDDEPILV GPDDIAAVAS
601: VWSGIPVQQI TADERMLLMS LEDQLRGRVV GQDEAVAAIS RAVKRSRVGL KDPDRPIAAM LFCGPTGVGK TELTKALAAN YFGSEESMLR LDMSEYMERH
701: TVSKLIGSPP GYVGFEEGGM LTEAIRRRPF TVVLFDEIEK AHPDIFNILL QLFEDGHLTD SQGRRVSFKN ALIIMTSNVG SLAIAKGRHG SIGFILDDDE
801: EAASYTGMKA LVVEELKNYF RPELLNRIDE IVIFRQLEKA QMMEILNLML QDLKSRLVAL GVGLEVSEPV KELICKQGYD PAYGARPLRR TVTEIVEDPL
901: SEAFLAGSFK PGDTAFVVLD DTGNPSVRTK PDSSTIRVTD KTSIA

Arabidopsis Description

CLPDChaperone protein ClpD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42762]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.