CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029193.1-P	Field mustard	plastid	99.57	98.3
CDY32646	Canola	plastid	96.99	96.68
CDX71686	Canola	plastid	91.62	91.52
AT5G51070.1	Thale cress	plastid	92.16	90.79
GSMUA_Achr6P23780_001	Banana	cytosol	61.12	67.34
VIT_19s0014g00020.t01	Wine grape	plastid	68.31	67.23
Solyc03g117950.2.1	Tomato	nucleus	67.99	65.66
PGSC0003DMT400036893	Potato	plastid	67.99	65.6
OQU81478	Sorghum	cytosol	59.4	64.98
HORVU5Hr1G081860.1	Barley	cytosol	53.17	64.79
HORVU2Hr1G072020.5	Barley	plastid	57.14	63.79
Os02t0526400-01	Rice	cytosol, plasma membrane	55.75	63.14
KRH63903	Soybean	plastid	63.48	62.47
KRH54048	Soybean	plastid	63.48	62.21
Zm00001d003847_P001	Maize	plastid	61.87	61.8
TraesCS2B01G307500.1	Wheat	plastid	61.33	60.49
TraesCS5B01G321800.1	Wheat	plastid	60.15	60.41
TraesCS2A01G291100.1	Wheat	plastid	61.22	60.25
TraesCS2D01G289100.1	Wheat	plastid	61.22	60.25
TraesCS5A01G321300.1	Wheat	plastid	59.83	60.15
TraesCS5D01G328100.1	Wheat	plastid	59.94	60.0
EES05165	Sorghum	plastid	60.69	59.04
Zm00001d016664_P001	Maize	plastid	59.94	58.92
GSMUA_Achr10P...	Banana	plastid	58.97	55.4
CDY64710	Canola	cytosol	42.43	48.05
CDX84888	Canola	cytosol	42.0	47.28
CDY64721	Canola	cytosol	11.71	44.67
CDX68504	Canola	mitochondrion	43.29	43.43
CDX83052	Canola	mitochondrion	43.18	43.37
CDY05878	Canola	mitochondrion	43.39	43.35
CDY45800	Canola	plastid	42.86	43.32
CDX85552	Canola	cytosol	11.6	42.35
CDX73074	Canola	cytosol	31.36	39.3
CDX96531	Canola	cytosol	31.36	39.3
CDX68190	Canola	nucleus	33.51	38.28
CDY53470	Canola	mitochondrion	32.22	37.83
CDX85823	Canola	nucleus	35.02	36.92
CDX90991	Canola	plastid	37.7	36.41
CDY68892	Canola	mitochondrion, plastid	32.22	36.19
CDY26423	Canola	plastid	37.06	35.46
CDX69524	Canola	plastid	37.06	35.46
CDX76768	Canola	mitochondrion	36.84	35.25
CDY56280	Canola	mitochondrion	36.84	35.22
CDX85551	Canola	plastid	21.91	31.19

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.5	Gene3D:3.40.50.300	GO:A0A078HMK5	UniProt:A0A078HMK5
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	EnsemblPlants:CDY38846	ProteinID:CDY38846	ProteinID:CDY38846.1	InterPro:ClpA/B
InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00066684001	InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861
PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR43572
PANTHER:PTHR43572:SF20	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI0004EE4ED3
SEG:seg	:	:	:	:	:

Description

BnaA03g13330DBnaA03g13330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMK5]

Coordinates

chrLK032434:+:10215..15013

Molecular Weight (calculated)

102100.0 Da

IEP (calculated)

5.818

GRAVY (calculated)

-0.245

Length

931 amino acids

Sequence
(BLAST)

001: MEVLSTSSPL TLHTRRLPSS SSSPVTSFAA SSLSSFSSSY LGISLSNRRT IHRLSTTPTN SRRFPRKKRN KLTPISAVFE RFTERAIRAI IFSQKEAKSL
101: GKDMVYPQHL LLGLIAEDRD PQGFLGSGVT VDKAREAVSS IWDKANSDDS GLSESTDMPF SISTKRVFEA AVEYSRTLEC QYIAPEHIAV GLFTVDDGSA
201: GKVLKRLGAN MNLLTAAALT RLKGEIAKDG REPPSSKDAS PNGRVGGPGR TKEKSVLEQF CVDLTARASE GLIDPVIGRE KEVQRVIQIL CRRTKNNPIL
301: LGEAGVGKTA IAEGLAISIA EANAPGFLLT KRIMSLDIGL LMAGAKERGE LESRVTALIS EVKKSGKVIL FIDEVHTLIG SGTVGRGNKG SGLDIANLLK
401: PPLGRGELQC IASTTLDEFR SQFEKDKALA RRFQPVLIDE PSEEDAVKIL IGLREKYEAH HNCKYTMEAV DAAVYLSSRY IADRFLPDKA IDLIDEAGSR
501: ARIQAFRKKK EDAICILSKP PDDYWQEIRT VQAMHEVVLS SRPNQEDGNN IVDESTELVE ESSLPPAAGN DEPIEVGPDD IAAVASAWSG IPVQQITADE
601: RMLLMGLEDQ LRNRVVGQDE AVAAISRAVK RSRVGLKDPD RPIAAMLFCG PTGVGKTELT KALAANYFGS EESMLRLDMS EYMERHTVSK LIGSPPGYVG
701: FEEGGMLTEA IRRRPFTVVL FDEIEKAHPD IFNILLQLFE DGHLTDSQGR RVSFKNALII MTSNVGSSAI AKGRQRSIGF ILDDDEEEAS YSGMKALVVE
801: ELKNYFRPEL LNRIDEIVIF RQLEQTQMME ILNLMLQDLK SRLVALGVGL EVSEPVKELI CRQGYDPAYG ARPLRRTVTE IVEDPLSEAF LAGSFKPGDT
901: AFVVLDDTGN PSVRTKPDSH NVRVTDKTSM A

Best Arabidopsis Sequence Match ( AT5G51070.1 )
(BLAST)

001: MEVLSTSSPL TLHSHRLLSA SSSSSHVTSI AASSLSSFAS SYLGISLSNR TIHRFSTTPT NLRRFPQRKR KKFTPISAVF ERFTERAIRA IIFSQKEAKS
101: LGKDMVYTQH LLLGLIAEDR DPQGFLGSGI TIDKAREAVW SIWDEANSDS KQEEASSTSY SKSTDMPFSI STKRVFEAAV EYSRTMDCQY IAPEHIAVGL
201: FTVDDGSAGR VLKRLGANMN LLTAAALTRL KGEIAKDGRE PSSSSKGSFE SPPSGRIAGS GPGGKKAKNV LEQFCVDLTA RASEGLIDPV IGREKEVQRV
301: IQILCRRTKN NPILLGEAGV GKTAIAEGLA ISIAEASAPG FLLTKRIMSL DIGLLMAGAK ERGELEARVT ALISEVKKSG KVILFIDEVH TLIGSGTVGR
401: GNKGSGLDIA NLLKPSLGRG ELQCIASTTL DEFRSQFEKD KALARRFQPV LINEPSEEDA VKILLGLREK YEAHHNCKYT MEAIDAAVYL SSRYIADRFL
501: PDKAIDLIDE AGSRARIEAF RKKKEDAICI LSKPPNDYWQ EIKTVQAMHE VVLSSRQKQD DGDAISDESG ELVEESSLPP AAGDDEPILV GPDDIAAVAS
601: VWSGIPVQQI TADERMLLMS LEDQLRGRVV GQDEAVAAIS RAVKRSRVGL KDPDRPIAAM LFCGPTGVGK TELTKALAAN YFGSEESMLR LDMSEYMERH
701: TVSKLIGSPP GYVGFEEGGM LTEAIRRRPF TVVLFDEIEK AHPDIFNILL QLFEDGHLTD SQGRRVSFKN ALIIMTSNVG SLAIAKGRHG SIGFILDDDE
801: EAASYTGMKA LVVEELKNYF RPELLNRIDE IVIFRQLEKA QMMEILNLML QDLKSRLVAL GVGLEVSEPV KELICKQGYD PAYGARPLRR TVTEIVEDPL
901: SEAFLAGSFK PGDTAFVVLD DTGNPSVRTK PDSSTIRVTD KTSIA

Arabidopsis Description

CLPDChaperone protein ClpD, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P42762]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.