CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08050_001	Banana	cytosol	14.72	95.28
CDX84888	Canola	cytosol	92.34	91.78
Bra018030.1-P	Field mustard	mitochondrion	97.08	89.86
CDX68504	Canola	mitochondrion	99.51	88.15
CDX83052	Canola	mitochondrion	99.27	88.03
CDY05878	Canola	mitochondrion	99.76	87.98
GSMUA_Achr6P08040_001	Banana	cytosol	68.86	87.89
Os04t0397100-01	Rice	plastid	41.73	85.11
AT3G48870.3	Thale cress	cytosol, plastid	96.72	83.51
CDY45800	Canola	plastid	92.09	82.19
Solyc12g042060.1.1	Tomato	plastid	91.85	81.8
PGSC0003DMT400037527	Potato	cytosol	91.73	81.69
PGSC0003DMT400036961	Potato	plastid	91.0	80.86
KRH54115	Soybean	plastid	90.63	80.8
KRH59753	Soybean	endoplasmic reticulum	90.15	80.63
KRH63851	Soybean	plastid	90.39	80.59
Solyc03g118340.2.1	Tomato	nucleus	90.75	80.56
GSMUA_Achr6P16470_001	Banana	plastid	85.77	80.48
GSMUA_Achr3P18630_001	Banana	plastid	88.32	80.4
TraesCS6D01G183600.2	Wheat	cytosol, plastid	89.29	80.13
KRH41069	Soybean	mitochondrion, plastid	89.54	80.09
TraesCS6A01G195200.1	Wheat	plastid	89.17	80.02
TraesCS2B01G304200.1	Wheat	golgi	89.17	79.93
TraesCS2D01G285800.1	Wheat	plastid	89.17	79.93
HORVU2Hr1G071080.3	Barley	plastid	89.17	79.93
Zm00001d003894_P004	Maize	plastid	89.42	79.8
TraesCS6B01G233800.1	Wheat	plastid	88.93	79.8
Os12t0230100-01	Rice	plastid	89.17	79.76
KXG23307	Sorghum	plastid	89.29	79.7
Zm00001d025273_P019	Maize	plastid	89.29	79.7
EES12052	Sorghum	plastid	89.29	79.7
PGSC0003DMT400054236	Potato	plastid	88.08	79.56
Zm00001d024009_P001	Maize	plastid	89.05	79.48
TraesCS2A01G287300.2	Wheat	plastid	86.5	79.44
TraesCS5A01G118900.1	Wheat	unclear	88.2	78.8
TraesCS5D01G118700.1	Wheat	plastid	88.2	78.8
TraesCS5B01G112500.1	Wheat	plastid	88.08	78.7
GSMUA_Achr8P09160_001	Banana	plastid	87.1	77.49
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	91.0	76.25
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	87.23	73.69
TraesCS4B01G082900.1	Wheat	mitochondrion	56.33	61.49
GSMUA_AchrUn_...	Banana	plastid	81.27	57.05
CDY64721	Canola	cytosol	13.38	45.08
CDX73074	Canola	cytosol	39.78	44.01
CDX96531	Canola	cytosol	39.54	43.74
CDX85552	Canola	cytosol	13.5	43.53
CDY38846	Canola	plastid	48.05	42.43
CDX71686	Canola	plastid	48.05	42.38
CDY32646	Canola	plastid	48.05	42.29
CDY53470	Canola	mitochondrion	40.27	41.74
CDX68190	Canola	nucleus	40.63	40.98
CDY68892	Canola	mitochondrion, plastid	40.51	40.17
CDX85823	Canola	nucleus	42.7	39.75
CDX90991	Canola	plastid	45.62	38.9
CDY56280	Canola	mitochondrion	45.5	38.4
CDX76768	Canola	mitochondrion	45.38	38.34
CDX69524	Canola	plastid	45.38	38.34
CDY26423	Canola	plastid	45.26	38.23
CDX85551	Canola	plastid	27.49	34.56

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	GO:A0A078JE23	UniProt:A0A078JE23
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	EnsemblPlants:CDY64710	ProteinID:CDY64710	ProteinID:CDY64710.1	InterPro:ClpA/B
InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0008150
GO:GO:0008152	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00042584001	InterPro:IPR001943	InterPro:IPR036628	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02151	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300
ScanProsite:PS00870	ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF8	SMART:SM00382
SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI0004EEFF51	InterPro:UVR_dom	SEG:seg

Description

BnaA06g38690DBnaA06g38690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JE23]

Coordinates

chrLK034526:+:23716..26923

Molecular Weight (calculated)

91599.3 Da

IEP (calculated)

5.446

GRAVY (calculated)

-0.343

Length

822 amino acids

Sequence
(BLAST)

001: MFERFTEKAI KVIMLSQEEA RRLGHNFVGT EQILLGLIGE GTGIAAKVLK SMGINLKDSR VEVEKIIGRG SGFVAVEIPF TPRAKRVLEL SLEEARQLGH
101: NYIGSEHLLL GLLREGEGVA ARVLENLGVD ASNIRTQVIR MVGENNEVTA SVGGGSSGNS KMPTLEEYGT NLTKLAEEGK LDPVVGRQPQ IERVVQILAR
201: RTKNNPCLIG EPGVGKTAIA EGLAQRIASG DVPETIEGKT VITLDMGLLV AGTKYRGEFE ERLKKLMEEI RQSDDIILFI DEVHTLIGAG AAEGAIDAAN
301: ILKPALARGE LQCIGATTLD EYRKHIEKDP ALERRFQPVK VPEPTVDEAI QILHGLRERY EIHHKLRYTD EALVAAAQLS HQYISDRFLP DKAIDLIDEA
401: GSRVRLRHAQ VPEEARELER QLRQITKEKN EAVRGQDFEK AGSHRDREIE LRAEIAAVLA KGKEVNKAET EAGEEGGPTV TESDIQHIVS TWTGIPVEKV
501: SSDESSRLLK MEQTLHTRVI GQDEAVKAIS RAIRRARVGL KNPNRPIASF IFSGPTGVGK SELAKALAAY YFGSEEAMIR LDMSEFMERH TVSKLIGSPP
601: GYVGYTEGGQ LTEAVRRRPY TLVLFDEIEK AHPDVFNMML QILEDGRLTD SKGRTVDFKN TLLIMTSNVG SSVIEKGGRR IGFDLDYDEK DSSYNRIKSL
701: VTEELKQYFR PEFLNRLDEM IVFRQLTKLE VKEIADIMLK EVVVRLKDKE IELQVTERFK ERVVDEGFDP SYGARPLRRA IMRLLEDSMA EKMLSREIKD
801: GDSVIVDVDA EGKAMEDPIP VL

Best Arabidopsis Sequence Match ( AT3G48870.2 )
(BLAST)

001: MKMSSLKAPV LRIQATEYRE PRGRVKMMSS LQAPLLTIQS FSGLRAPSAL DYLGRPSPGF LVKYKLAKSS GREKASRCVP KAMFERFTEK AIKVIMLSQE
101: EARRLGHNFV GTEQILLGLI GEGTGIAAKV LKSMGINLKD SRVEVEKIIG RGSGFVAVEI PFTPRAKRVL ELSLEEARQL GHNYIGSEHL LLGLLREGEG
201: VAARVLENLG ADPSNIRTQV IRMVGENNEV TASVGGGSSG NSKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL ARRTKNNPCL IGEPGVGKTA
301: IAEGLAQRIA SGDVPETIEG KTVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR GELQCIGATT
401: IDEYRKHIEK DPALERRFQP VKVPEPTVEE AIQILQGLRE RYEIHHKLRY TDEALVAAAQ LSHQYISDRF LPDKAIDLID EAGSRVRLRH AQLPEEAREL
501: EKQLRQITKE KNEAVRSQDF EMAGSHRDRE IELKAEIANV LSRGKEVAKA ENEAEEGGPT VTESDIQHIV ATWTGIPVEK VSSDESSRLL QMEQTLHTRV
601: IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG QLTEAVRRRP
701: YTLVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDHDE KDSSYNRIKS LVTEELKQYF RPEFLNRLDE
801: MIVFRQLTKL EVKEIADIML KEVVARLEVK EIELQVTERF KERVVDEGFD PSYGARPLRR AIMRLLEDSM AEKMLSRDIK EGDSVIVDVD AEGSVVVLSG
901: TTGRVGGFAA EEAMEDPIPI L

Arabidopsis Description

CLPC2Chaperone protein ClpC2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SXJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.