Factsheet for GSMUA_AchrUn_randomP22440_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT5G50920.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT5G50920.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT5G50920.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08050_001	Banana	cytosol	10.76	99.21
GSMUA_Achr3P18630_001	Banana	plastid	66.78	86.6
GSMUA_Achr6P08040_001	Banana	cytosol	46.63	84.78
CDX84888	Canola	cytosol	59.18	83.8
GSMUA_Achr6P16470_001	Banana	plastid	62.34	83.33
CDY64710	Canola	cytosol	57.05	81.27
KRH63851	Soybean	plastid	63.54	80.69
KRH54115	Soybean	plastid	63.54	80.69
PGSC0003DMT400037527	Potato	cytosol	63.19	80.17
Solyc12g042060.1.1	Tomato	plastid	63.11	80.06
EES12052	Sorghum	plastid	62.94	80.02
KRH59753	Soybean	endoplasmic reticulum	62.77	79.98
Zm00001d025273_P019	Maize	plastid	62.85	79.91
TraesCS6A01G195200.1	Wheat	plastid	62.51	79.91
TraesCS6D01G183600.2	Wheat	cytosol, plastid	62.51	79.91
Zm00001d003894_P004	Maize	plastid	62.77	79.8
TraesCS6B01G233800.1	Wheat	plastid	62.34	79.69
HORVU2Hr1G071080.3	Barley	plastid	62.17	79.39
PGSC0003DMT400036961	Potato	plastid	62.68	79.35
TraesCS2D01G285800.1	Wheat	plastid	62.08	79.28
TraesCS2B01G304200.1	Wheat	golgi	62.08	79.28
Solyc03g118340.2.1	Tomato	nucleus	62.68	79.27
GSMUA_Achr8P09160_001	Banana	plastid	62.51	79.22
KRH41069	Soybean	mitochondrion, plastid	62.17	79.22
Os12t0230100-01	Rice	plastid	61.91	78.89
TraesCS2A01G287300.2	Wheat	plastid	60.2	78.77
KXG23307	Sorghum	plastid	61.91	78.72
CDY45800	Canola	plastid	61.83	78.61
Zm00001d024009_P001	Maize	plastid	61.74	78.5
AT5G50920.1	Thale cress	plastid	62.25	78.47
Bra022751.1-P	Field mustard	plastid	62.08	78.26
PGSC0003DMT400054236	Potato	plastid	60.38	77.69
Bra018030.1-P	Field mustard	mitochondrion	58.58	77.25
TraesCS5A01G118900.1	Wheat	unclear	60.38	76.85
TraesCS5D01G118700.1	Wheat	plastid	60.29	76.74
TraesCS5B01G112500.1	Wheat	plastid	60.2	76.63
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	64.05	76.45
CDX68504	Canola	mitochondrion	60.38	76.19
Bra029922.1-P	Field mustard	mitochondrion	60.29	76.08
CDX83052	Canola	mitochondrion	60.2	76.05
CDY05878	Canola	mitochondrion	60.38	75.86
AT3G48870.3	Thale cress	cytosol, plastid	59.69	73.42
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	60.03	72.25
Os04t0397100-01	Rice	plastid	24.85	72.21
PGSC0003DMT400037525	Potato	plastid	13.58	62.6
VIT_07s0005g05810.t01	Wine grape	cytosol	3.5	60.29
VIT_16s0100g00180.t01	Wine grape	cytosol	3.5	60.29
TraesCS4B01G082900.1	Wheat	mitochondrion	37.57	58.43
GSMUA_Achr6P23780_001	Banana	cytosol	28.86	40.0
GSMUA_Achr9P22420_001	Banana	cytosol	30.06	39.86
GSMUA_Achr6P16670_001	Banana	plastid	30.23	37.78
GSMUA_Achr1P13710_001	Banana	cytosol	25.19	34.67
GSMUA_Achr3P16240_001	Banana	cytosol	25.19	34.62
GSMUA_Achr10P...	Banana	plastid	28.01	33.1
GSMUA_Achr2P12140_001	Banana	plastid	3.5	17.9

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	InterPro:ClpA/B_CS1
InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152	GO:GO:0019538	EnsemblPlantsGene:GSMUA_AchrUn_randomG22440_001
EnsemblPlants:GSMUA_AchrUn_randomP22440_001	EnsemblPlants:GSMUA_AchrUn_randomT22440_001	InterPro:IPR001943	InterPro:IPR036628	UniProt:M0UBF2	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02151	PFAM:PF02861	PFAM:PF07724	ScanProsite:PS00870	PFscan:PS50151
PANTHER:PTHR43572	PANTHER:PTHR43572:SF19	SMART:SM00382	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI000294A50D
InterPro:UVR_dom	SEG:seg	:	:	:	:

Description

ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG22440_001]

Coordinates

chrchrUn_random:+:109928956..109938387

Molecular Weight (calculated)

131424.0 Da

IEP (calculated)

8.023

GRAVY (calculated)

-0.215

Length

1171 amino acids

Sequence
(BLAST)

0001: MAGSLVQLTI LPSALANRRQ SQLRGSGKAK RGAKMMCQLQ MHPLRLPGFA GLRRADNLEF FSRNRHDFHS LVSVYVSYAW GKASRGVAKA MFERFTEKAI
0101: KVIMLAQEEA RRLGHNFVGT EQILLGLIGE GTGIAAKVLK SMGINLKDAR VEVEKIIGRG SGFVAVEIPF TPRAKRVLEL SLEEARQLGH NYIGSEHLLL
0201: GLLREGEGVA ARVLESLGAD PSNIRTQVIR MVGESTEAVG AGVGGGSSGN KMPTLEEYGT NLTKLAEEGK LDPVVGRQDQ IERVTQILGR RTKNNPCLIG
0301: EPGVGKTAIA EGLAQRIVNG DVPETIEGKK VITLDMGLLV AGTKYRGEFE ERLKKLMEEI KQSDEIILFI DEVHTLIGAG AAEGAIDAAN ILKPALARGE
0401: LQCIGATTLD EYRKHIEKDP ALERRFQPVK VPEPTVDETI QILRGLRERY EIHHKLRYTD EALIAAAQLS YQYIRFRFSG HKDLKKKKDD KDSCVNLTSW
0501: SPDEETIQLD SDPTRLLNKD SLGSVLVFVD VFIINHPKRL DSVRSRQGGT LCHHGMSRNA IFERRLNYLL AEVAKLGYRT TKVEVLVAEV EMLLSVQLDR
0601: ISFLIHRIHL EFVCLFVMLY LFYLNQFHYL VSFGYSNEFS IWVSAFNVNN FCLDRVPSPD LLTVFPPGLL TFGACTHCLF YNSLRLLVFY LKTLIWSLWE
0701: VLLATDKKIK IFFPFFSGTS RATNGNLGQS SLYWSLRDIY LNGIFGARKA FSRVNAHWYP STCISSFVCH RKIEEEHFLI RSTSLKPLEA GFFSFAKCHF
0801: WCDNITMTDR FLPDKAIDLI DEAGSRVRLR HAQLPEEARE LDKELRQITK EKNEAVRSQD FEKAGELRDR EMELKAQISA LIDKGKERSQ AESEAGDSGP
0901: VVTEADIQHI VSSWTGIPVE KVSSDESDRL LKMEETLHKR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGR HTVSKLIGSP PGYVGYTEGG
1001: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNK DSSYNRIKSL VTEELKQYFR PEFLNRLDEM IVFRQLTKLE
1101: VKEIADIMLK EVFDRLKAKD IELQDSLAEK MLAGEIKEGD SAIVDADSEG NVTVLNGGSS VPESMPPVVP V

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.