Factsheet for Bra022751.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84888	Canola	cytosol	89.02	100.0
CDY45800	Canola	plastid	98.39	99.24
GSMUA_Achr6P08050_001	Banana	cytosol	13.46	98.43
AT5G50920.1	Thale cress	plastid	97.2	97.2
GSMUA_Achr6P08040_001	Banana	cytosol	62.54	90.22
Os04t0397100-01	Rice	plastid	38.97	89.83
Solyc12g042060.1.1	Tomato	plastid	87.73	88.3
PGSC0003DMT400037527	Potato	cytosol	87.62	88.19
Bra018030.1-P	Field mustard	mitochondrion	84.28	88.18
KRH59753	Soybean	endoplasmic reticulum	86.87	87.81
KRH54115	Soybean	plastid	87.08	87.74
KRH63851	Soybean	plastid	86.98	87.64
KRH41069	Soybean	mitochondrion, plastid	86.22	87.16
PGSC0003DMT400036961	Potato	plastid	86.65	87.03
Solyc03g118340.2.1	Tomato	nucleus	86.44	86.72
GSMUA_Achr3P18630_001	Banana	plastid	84.28	86.71
Bra029922.1-P	Field mustard	mitochondrion	86.44	86.53
PGSC0003DMT400054236	Potato	plastid	84.18	85.93
TraesCS6A01G195200.1	Wheat	plastid	84.5	85.7
TraesCS6D01G183600.2	Wheat	cytosol, plastid	84.39	85.59
TraesCS6B01G233800.1	Wheat	plastid	84.39	85.59
Zm00001d003894_P004	Maize	plastid	84.5	85.23
Zm00001d025273_P019	Maize	plastid	84.39	85.12
EES12052	Sorghum	plastid	84.28	85.02
HORVU2Hr1G071080.3	Barley	plastid	83.85	84.95
TraesCS2D01G285800.1	Wheat	plastid	83.75	84.84
TraesCS2B01G304200.1	Wheat	golgi	83.75	84.84
GSMUA_Achr6P16470_001	Banana	plastid	79.76	84.59
TraesCS2A01G287300.2	Wheat	plastid	81.38	84.47
Zm00001d024009_P001	Maize	plastid	83.42	84.15
Os12t0230100-01	Rice	plastid	83.1	84.0
KXG23307	Sorghum	plastid	83.21	83.93
TraesCS5A01G118900.1	Wheat	unclear	82.99	83.8
TraesCS5D01G118700.1	Wheat	plastid	82.88	83.7
TraesCS5B01G112500.1	Wheat	plastid	82.78	83.59
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	87.51	82.87
GSMUA_Achr8P09160_001	Banana	plastid	81.59	82.03
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	82.35	78.62
TraesCS4B01G082900.1	Wheat	mitochondrion	51.24	63.21
GSMUA_AchrUn_...	Banana	plastid	78.26	62.08
Bra032044.1-P	Field mustard	mitochondrion	36.71	42.95
Bra029193.1-P	Field mustard	plastid	43.38	42.74
Bra023518.1-P	Field mustard	plastid	41.33	39.88
Bra007816.1-P	Field mustard	mitochondrion	41.66	39.73
Bra003807.1-P	Field mustard	nucleus	37.57	39.57
Bra015922.1-P	Field mustard	nucleus	38.21	38.97
Bra008698.1-P	Field mustard	plastid	40.8	38.95

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
EnsemblPlantsGene:Bra022751	EnsemblPlants:Bra022751.1	EnsemblPlants:Bra022751.1-P	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2
InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004176	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575
GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006508
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009532
GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009658	GO:GO:0009706
GO:GO:0009719	GO:GO:0009735	GO:GO:0009941	GO:GO:0009987	GO:GO:0010380	GO:GO:0016020
GO:GO:0016043	GO:GO:0016787	GO:GO:0019538	GO:GO:0030312	GO:GO:0045036	GO:GO:0045037
InterPro:IPR001943	InterPro:IPR036628	UniProt:M4E1V1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02151
PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871
PFscan:PS50151	PFscan:PS51257	PANTHER:PTHR43572	PANTHER:PTHR43572:SF19	SMART:SM00382	SMART:SM01086
SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI00025401BE	InterPro:UVR_dom	SEG:seg	:

Description

AT5G50920 (E=0.0) CLPC, ATHSP93-V, HSP93-V, DCA1, CLPC1 | CLPC1; ATP binding / ATP-dependent peptidase/ ATPase

Coordinates

chrA03:+:6814795..6818353

Molecular Weight (calculated)

103165.0 Da

IEP (calculated)

6.683

GRAVY (calculated)

-0.390

Length

929 amino acids

Sequence
(BLAST)

001: MAMATRVMSQ YTPLSLACSQ RNAPSRGSGT SKRSVKMMCT QLQVSGSRMQ GFLGLRGNNV LDTLGRSRQS FGGKVRQAMN VPKGKGSRGV VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSG SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIKQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRV IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL QEVFERLKKK EIELQVTERF RERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: SEGKVTVLNG GSGTPTTSLE EQEDSLPVA

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.