Factsheet for Solyc03g118340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g065380.2.1
Solyc11g018610.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	Solyc06g065380.2.1	AT4G09570.1	19130088
AT5G50920.1	Solyc11g018610.1.1	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036961	Potato	plastid	98.49	98.59
GSMUA_Achr6P08050_001	Banana	cytosol	13.28	96.85
PGSC0003DMT400054236	Potato	plastid	94.17	95.82
Solyc12g042060.1.1	Tomato	plastid	93.84	94.15
CDX84888	Canola	cytosol	82.29	92.14
GSMUA_Achr6P08040_001	Banana	cytosol	63.61	91.46
CDY64710	Canola	cytosol	80.56	90.75
Os04t0397100-01	Rice	plastid	39.42	90.57
KRH54115	Soybean	plastid	88.98	89.37
KRH63851	Soybean	plastid	88.88	89.26
KRH59753	Soybean	endoplasmic reticulum	88.01	88.68
KRH41069	Soybean	mitochondrion, plastid	87.26	87.92
GSMUA_Achr3P18630_001	Banana	plastid	85.53	87.71
TraesCS6A01G195200.1	Wheat	plastid	85.64	86.57
TraesCS6D01G183600.2	Wheat	cytosol, plastid	85.53	86.46
AT5G50920.1	Thale cress	plastid	86.72	86.44
Bra022751.1-P	Field mustard	plastid	86.72	86.44
GSMUA_Achr6P16470_001	Banana	plastid	81.75	86.42
TraesCS6B01G233800.1	Wheat	plastid	85.42	86.35
CDY45800	Canola	plastid	85.75	86.21
Zm00001d025273_P019	Maize	plastid	85.75	86.21
HORVU2Hr1G071080.3	Barley	plastid	85.31	86.15
EES12052	Sorghum	plastid	85.53	85.99
Zm00001d003894_P004	Maize	plastid	85.53	85.99
TraesCS2D01G285800.1	Wheat	plastid	85.1	85.93
TraesCS2B01G304200.1	Wheat	golgi	85.1	85.93
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	90.82	85.73
TraesCS2A01G287300.2	Wheat	plastid	82.72	85.59
Bra018030.1-P	Field mustard	mitochondrion	82.07	85.59
KXG23307	Sorghum	plastid	84.67	85.12
Os12t0230100-01	Rice	plastid	84.34	84.98
Zm00001d024009_P001	Maize	plastid	84.23	84.69
TraesCS5A01G118900.1	Wheat	unclear	83.8	84.35
TraesCS5B01G112500.1	Wheat	plastid	83.8	84.35
CDX68504	Canola	mitochondrion	84.34	84.16
TraesCS5D01G118700.1	Wheat	plastid	83.59	84.13
Bra029922.1-P	Field mustard	mitochondrion	84.23	84.05
CDX83052	Canola	mitochondrion	84.13	84.03
CDY05878	Canola	mitochondrion	84.23	83.69
GSMUA_Achr8P09160_001	Banana	plastid	82.18	82.36
AT3G48870.3	Thale cress	cytosol, plastid	83.15	80.88
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	83.15	79.14
TraesCS4B01G082900.1	Wheat	mitochondrion	51.62	63.48
GSMUA_AchrUn_...	Banana	plastid	79.27	62.68
Solyc06g011380.2.1	Tomato	cytosol, plastid	12.74	57.56
Solyc03g117950.2.1	Tomato	nucleus	43.41	41.7
Solyc06g082560.1.1	Tomato	plastid	37.26	40.4
Solyc02g088610.2.1	Tomato	plastid	41.36	39.08
Solyc03g115230.2.1	Tomato	plastid	38.34	38.97
Solyc06g011400.2.1	Tomato	nucleus	21.92	38.37
Solyc06g011370.2.1	Tomato	plastid	9.5	29.53

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0019538	InterPro:IPR001943	InterPro:IPR036628	UniProt:K4BLY5
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02151	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431
PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF8
SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	EnsemblPlantsGene:Solyc03g118340.2	EnsemblPlants:Solyc03g118340.2.1
UniParc:UPI0002767C35	InterPro:UVR_dom	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:-:67245569..67250466

Molecular Weight (calculated)

102607.0 Da

IEP (calculated)

6.491

GRAVY (calculated)

-0.327

Length

926 amino acids

Sequence
(BLAST)

001: MMARALVQST NILPSVAGER AGQFNGSRKD QRTVRMLCNV KCCSSRLNNF AGLRGCNALD TLLVKSGETL HSKVAAATFV RRPRGCRFVP KAMFERFTEK
101: AIKVIMLAQE EARRLGHNFV GTEQILLGLI GEGTGIAAKV LKSMGINLKD ARVEVEKIIG RGSGFIAVEI PFTPRAKRVL ELSLEEARQL GHNYIGSEHL
201: LLGLLREGEG VAARVLENLG ADPTNIRTQV IRMVGESSEA VGASVGGGTS GLKMPTLEEY GTNLTKLAEE GKLDPVVGRQ AQIERVTQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA NGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIKQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPSVDE TIQILKGLRE RYEIHHKLHY TDEAIEAAAK LSHQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQLPEEAREL EKELRQITKE KNESVRGQDF EKAGELRDRE MDLKAQISAL IDKNKEKSKA ESEAGDAAGP IVTEADIQHI VSSWTGIPVE KVSTDESDRL
601: LKMEETLHTR VIGQDEAVKA ISRAIRRARV GLKNPNRPIA SFIFSGPTGV GKSELAKSLA TYYFGSEEAM IRLDMSEFME RHTVSKLIGS PPGYVGYTEG
701: GQLTEAVRRR PYTVVLFDEI EKAHPDVFNM MLQILEDGRL TDSKGRTVDF KNTLLIMTSN VGSSVIEKGG RRIGFDLDFD EKDSSYNRIK SLVTEELKQY
801: FRPEFLNRLD EMIVFRQLTK LEVKEIADIM LKEVFVRLKN KEIELQVTER FRDRVVDEGY NPSYGARPLR RAIMRLLEDS MAEKMLAGEI KEGDSVIVDV
901: DSDGNVTVLN GTSGAPSDSA PEPILV

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.