Factsheet for PGSC0003DMT400036961

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400002331
PGSC0003DMT400067082

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	PGSC0003DMT400002331	AT4G09570.1	19130088
AT5G50920.1	PGSC0003DMT400067082	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118340.2.1	Tomato	nucleus	98.59	98.49
GSMUA_Achr6P08050_001	Banana	cytosol	13.41	97.64
PGSC0003DMT400054236	Potato	plastid	94.92	96.48
PGSC0003DMT400037527	Potato	cytosol	94.59	94.8
CDX84888	Canola	cytosol	82.38	92.14
GSMUA_Achr6P08040_001	Banana	cytosol	63.68	91.46
CDY64710	Canola	cytosol	80.86	91.0
Os04t0397100-01	Rice	plastid	39.35	90.32
KRH54115	Soybean	plastid	88.76	89.05
KRH63851	Soybean	plastid	88.65	88.94
KRH59753	Soybean	endoplasmic reticulum	88.0	88.57
GSMUA_Achr3P18630_001	Banana	plastid	85.73	87.82
KRH41069	Soybean	mitochondrion, plastid	87.03	87.6
Bra022751.1-P	Field mustard	plastid	87.03	86.65
TraesCS6A01G195200.1	Wheat	plastid	85.73	86.57
AT5G50920.1	Thale cress	plastid	86.92	86.54
TraesCS6D01G183600.2	Wheat	cytosol, plastid	85.62	86.46
CDY45800	Canola	plastid	86.05	86.43
GSMUA_Achr6P16470_001	Banana	plastid	81.84	86.42
TraesCS6B01G233800.1	Wheat	plastid	85.51	86.35
Zm00001d025273_P019	Maize	plastid	85.95	86.32
HORVU2Hr1G071080.3	Barley	plastid	85.51	86.26
Bra018030.1-P	Field mustard	mitochondrion	82.7	86.15
Zm00001d003894_P004	Maize	plastid	85.73	86.1
EES12052	Sorghum	plastid	85.73	86.1
TraesCS2D01G285800.1	Wheat	plastid	85.3	86.04
TraesCS2B01G304200.1	Wheat	golgi	85.3	86.04
TraesCS2A01G287300.2	Wheat	plastid	82.92	85.7
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	90.81	85.63
KXG23307	Sorghum	plastid	84.54	84.91
Os12t0230100-01	Rice	plastid	84.22	84.77
CDX68504	Canola	mitochondrion	84.86	84.59
Bra029922.1-P	Field mustard	mitochondrion	84.76	84.48
Zm00001d024009_P001	Maize	plastid	84.11	84.47
CDX83052	Canola	mitochondrion	84.65	84.47
TraesCS5A01G118900.1	Wheat	unclear	83.89	84.35
TraesCS5B01G112500.1	Wheat	plastid	83.89	84.35
CDY05878	Canola	mitochondrion	84.86	84.23
TraesCS5D01G118700.1	Wheat	plastid	83.68	84.13
GSMUA_Achr8P09160_001	Banana	plastid	82.38	82.47
AT3G48870.3	Thale cress	cytosol, plastid	83.24	80.88
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	83.24	79.14
PGSC0003DMT400037525	Potato	plastid	18.16	66.14
TraesCS4B01G082900.1	Wheat	mitochondrion	51.57	63.35
GSMUA_AchrUn_...	Banana	plastid	79.35	62.68
PGSC0003DMT400036893	Potato	plastid	43.14	41.35
PGSC0003DMT400003652	Potato	cytosol, plastid	41.95	39.63
PGSC0003DMT400063352	Potato	nucleus	38.81	39.36

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	EntrezGene:102583354	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N
InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0008150	GO:GO:0008152	GO:GO:0019538	InterPro:IPR001943	InterPro:IPR036628
UniProt:M1B4K0	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02151	PFAM:PF02861	PFAM:PF07724
PFAM:PF10431	EnsemblPlantsGene:PGSC0003DMG400014248	PGSC:PGSC0003DMG400014248	EnsemblPlants:PGSC0003DMT400036961	PRINTS:PR00300	ScanProsite:PS00870
ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF8	SMART:SM00382	SMART:SM01086
SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI000296BA41	InterPro:UVR_dom	RefSeq:XP_006341485.1	SEG:seg

Description

ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400014248]

Coordinates

chr3:-:57903700..57910043

Molecular Weight (calculated)

102434.0 Da

IEP (calculated)

6.594

GRAVY (calculated)

-0.332

Length

925 amino acids

Sequence
(BLAST)

001: MARALVQSTD ILSSVASERA GQFNGSRKNQ RTVRMLCNVK CSSSRLNSFA GLRGCNALDT LLVKSGETLH SKVAAATFVR RPRGCRFVPK AMFERFTEKA
101: IKVIMLAQEE ARRLGHNFVG TEQILLGLIG EGTGIAAKVL KSMGINLKDA RVEVEKIIGR GSGFIAVEIP FTPRAKRVLE LSLEEARQLG HNYIGSEHLL
201: LGLLREGEGV AARVLENLGA DPSNIRTQVI RMVGESSEAV GASVGGGTSG LKMPTLEEYG TNLTKLAEEG KLDPVVGRQA QIERVTQILG RRTKNNPCLI
301: GEPGVGKTAI AEGLAQRIAN GDVPETIEGK KVITLDMGLL VAGTKYRGEF EERLKKLMEE IKQSDDIILF IDEVHTLIGA GAAEGAIDAA NILKPALARG
401: ELQCIGATTL DEYRKHIEKD PALERRFQPV KVPEPSVDET IQILKGLRER YEIHHKLRYT DEAIDAAAKL SHQYISDRFL PDKAIDLIDE AGSRVRLRHA
501: QLPEEARELE KELRQITKEK NESVRGQDFE KAGELRDREM DLKAQISALI DKNKEKSKAE SEAGDAAGPI VTEADIHHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHTRV IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKSLAT YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDFDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADIML KEVFVRLKNK EIELQVTERF RDRVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAGEIK EGDSVIVDVD
901: SDGNVTVLNG SSGAPSDPAP EPILV

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.