Factsheet for GSMUA_Achr3P18630_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr2P08110_001
GSMUA_Achr6P25560_001
GSMUA_Achr9P08680_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	GSMUA_Achr10P...	AT4G09570.1	19130088
AT5G50920.1	GSMUA_Achr2P08110_001	AT4G09570.1	19130088
AT5G50920.1	GSMUA_Achr6P25560_001	AT4G09570.1	19130088
AT5G50920.1	GSMUA_Achr9P08680_001	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08050_001	Banana	cytosol	14.06	100.0
GSMUA_Achr6P08040_001	Banana	cytosol	67.55	94.72
CDX84888	Canola	cytosol	83.28	90.93
GSMUA_Achr6P16470_001	Banana	plastid	87.49	90.18
CDY64710	Canola	cytosol	80.4	88.32
KRH63851	Soybean	plastid	89.15	87.31
KRH54115	Soybean	plastid	89.04	87.2
PGSC0003DMT400037527	Potato	cytosol	88.7	86.78
Solyc12g042060.1.1	Tomato	plastid	88.59	86.67
TraesCS6D01G183600.2	Wheat	cytosol, plastid	87.71	86.46
TraesCS6A01G195200.1	Wheat	plastid	87.71	86.46
Zm00001d003894_P004	Maize	plastid	88.15	86.43
EES12052	Sorghum	plastid	88.15	86.43
Os04t0397100-01	Rice	plastid	38.54	86.35
Zm00001d025273_P019	Maize	plastid	88.04	86.32
TraesCS6B01G233800.1	Wheat	plastid	87.49	86.24
HORVU2Hr1G071080.3	Barley	plastid	87.49	86.15
TraesCS2D01G285800.1	Wheat	plastid	87.38	86.04
TraesCS2B01G304200.1	Wheat	golgi	87.38	86.04
PGSC0003DMT400036961	Potato	plastid	87.82	85.73
TraesCS2A01G287300.2	Wheat	plastid	84.94	85.7
KRH59753	Soybean	endoplasmic reticulum	87.15	85.64
Solyc03g118340.2.1	Tomato	nucleus	87.71	85.53
GSMUA_Achr8P09160_001	Banana	plastid	87.49	85.5
AT5G50920.1	Thale cress	plastid	87.26	84.82
CDY45800	Canola	plastid	86.49	84.8
KXG23307	Sorghum	plastid	86.49	84.8
KRH41069	Soybean	mitochondrion, plastid	86.27	84.77
Os12t0230100-01	Rice	plastid	86.16	84.66
Zm00001d024009_P001	Maize	plastid	86.16	84.47
Bra022751.1-P	Field mustard	plastid	86.71	84.28
PGSC0003DMT400054236	Potato	plastid	84.83	84.18
Bra018030.1-P	Field mustard	mitochondrion	82.28	83.67
TraesCS5A01G118900.1	Wheat	unclear	84.61	83.04
TraesCS5D01G118700.1	Wheat	plastid	84.5	82.93
TraesCS5B01G112500.1	Wheat	plastid	84.39	82.83
CDX68504	Canola	mitochondrion	84.61	82.33
Bra029922.1-P	Field mustard	mitochondrion	84.61	82.33
CDX83052	Canola	mitochondrion	84.39	82.2
CDY05878	Canola	mitochondrion	84.72	82.08
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	88.7	81.65
AT3G48870.3	Thale cress	cytosol, plastid	83.83	79.52
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	84.27	78.21
GSMUA_AchrUn_...	Banana	plastid	86.6	66.78
TraesCS4B01G082900.1	Wheat	mitochondrion	54.04	64.81
PGSC0003DMT400037525	Potato	plastid	17.16	61.02
VIT_07s0005g05810.t01	Wine grape	cytosol	4.43	58.82
VIT_16s0100g00180.t01	Wine grape	cytosol	4.43	58.82
GSMUA_Achr6P23780_001	Banana	cytosol	41.75	44.62
GSMUA_Achr9P22420_001	Banana	cytosol	41.75	42.7
GSMUA_Achr6P16670_001	Banana	plastid	42.52	40.98
GSMUA_Achr3P16240_001	Banana	cytosol	36.32	38.5
GSMUA_Achr1P13710_001	Banana	cytosol	36.1	38.31
GSMUA_Achr10P...	Banana	plastid	41.31	37.64
GSMUA_Achr2P12140_001	Banana	plastid	4.43	17.47

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0008150	GO:GO:0008152	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr3G18630_001	EnsemblPlants:GSMUA_Achr3P18630_001	EnsemblPlants:GSMUA_Achr3T18630_001
InterPro:IPR001943	InterPro:IPR036628	UniProt:M0SFS9	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02151
PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871
PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF19	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540
SUPFAM:SSF81923	UniParc:UPI000295AF6B	InterPro:UVR_dom	SEG:seg	:	:

Description

ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr3G18630_001]

Coordinates

chr3:+:20036519..20044267

Molecular Weight (calculated)

99959.7 Da

IEP (calculated)

6.596

GRAVY (calculated)

-0.318

Length

903 amino acids

Sequence
(BLAST)

001: MADSLVHSAI LPSAVMTRSQ SQLRGSGKAK RGAKMVRSMR MHPLRLQSFA GLRAADNLDF SSRCQQDFHS VVSRYISNPR GKATRGVPKA MFERFTEKAI
101: KVIMLAQEEA RRLGHNFVGT EQILLGLIGE GTGIAAKVLK SMGINLKDAR VEVEKIIGRG SGFVAVEIPF TPRAKRVLEL SLEEARQLGH NYIGSEHLLL
201: GLLREGEGVA ARVLESLGAD PSNIRTQANI FIDFVIRMVG ESTEAVGAGV GGGSSGNKMP TLEEYGTNLT KLAEEGKLDP VVGRQPQIER VTQILGRRTK
301: NNPCLIGEPG VGKTAIAEGL AQRIANGDVP ETIEGKKVIT LDMGLLVAGT KYRGEFEERL KKLMEEIKQS DEIILFIDEV HTLIGAGAAE GAIDAANILK
401: PALARGELQC IGATTLDEYR KHIEKDPALE RRFQPVRVPE PTVDETIQIL RGLRERYEIH HKLRYTDEAL VAAAQLSYQY ISDRFLPDKA IDLIDEAGSR
501: VRLRHAQLPE EARELDKELR QITKEKNEAV RGQDFEKAGE LRDREMELKA QISALIDKGK ERSKAESEAG DAGPVVNEAD IQHIVSSWTG IPVEKVSSDE
601: SDRLLKMEET LHKRVIGQDE AVKAISRAIR RARVGLKNPN RPIASFIFSG PTGVGKSELA KALASYYFGS EEAMIRLDMS EFMERHTVSK LIGSPPGYVG
701: YTEGGQLTEA VRRRPYTVVL FDEIEKAHPD VFNMMLQILE DGRLTDSKGR TVDFKNTLLI MTSNVGSSSL VTEELKQYFR PEFLNRLDEM IVFRQLTKLE
801: VKEIADIMLK EVFDRLKVKD IELQVTERFK DRVVDEGYNP SYGARPLRRA IMRLLEDSLA EKMLAGEIKE GDSAIVDVDT EGNVTVLNGG SGVPESIPPA
901: IPV

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.