CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90725
CDY05064

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50920.1	CDX90725	AT4G09570.1	19130088
AT5G50920.1	CDY05064	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P08050_001	Banana	cytosol	15.11	98.43
CDY64710	Canola	cytosol	91.78	92.34
GSMUA_Achr6P08040_001	Banana	cytosol	70.25	90.22
CDY45800	Canola	plastid	99.76	89.58
Bra022751.1-P	Field mustard	plastid	100.0	89.02
AT5G50920.1	Thale cress	plastid	99.15	88.27
Os04t0397100-01	Rice	plastid	42.68	87.59
Solyc12g042060.1.1	Tomato	plastid	93.59	83.86
PGSC0003DMT400037527	Potato	cytosol	93.47	83.75
KRH59753	Soybean	endoplasmic reticulum	92.62	83.35
KRH63851	Soybean	plastid	92.87	83.3
KRH54115	Soybean	plastid	92.87	83.3
GSMUA_Achr3P18630_001	Banana	plastid	90.93	83.28
KRH41069	Soybean	mitochondrion, plastid	92.02	82.81
CDX68504	Canola	mitochondrion	92.74	82.65
CDX83052	Canola	mitochondrion	92.5	82.52
PGSC0003DMT400036961	Potato	plastid	92.14	82.38
GSMUA_Achr6P16470_001	Banana	plastid	87.18	82.31
CDY05878	Canola	mitochondrion	92.74	82.3
Solyc03g118340.2.1	Tomato	nucleus	92.14	82.29
TraesCS6A01G195200.1	Wheat	plastid	90.93	82.1
TraesCS6D01G183600.2	Wheat	cytosol, plastid	90.81	81.99
TraesCS6B01G233800.1	Wheat	plastid	90.81	81.99
Zm00001d024009_P001	Maize	plastid	90.81	81.54
Zm00001d003894_P004	Maize	plastid	90.81	81.54
PGSC0003DMT400054236	Potato	plastid	89.72	81.54
HORVU2Hr1G071080.3	Barley	plastid	90.33	81.46
Zm00001d025273_P019	Maize	plastid	90.69	81.43
EES12052	Sorghum	plastid	90.69	81.43
TraesCS2D01G285800.1	Wheat	plastid	90.21	81.35
TraesCS2B01G304200.1	Wheat	golgi	90.21	81.35
KXG23307	Sorghum	plastid	90.57	81.32
Os12t0230100-01	Rice	plastid	90.33	81.28
TraesCS5A01G118900.1	Wheat	unclear	90.21	81.09
TraesCS5D01G118700.1	Wheat	plastid	90.08	80.98
TraesCS5B01G112500.1	Wheat	plastid	90.08	80.98
TraesCS2A01G287300.2	Wheat	plastid	87.55	80.89
GSMUA_Achr8P09160_001	Banana	plastid	88.39	79.11
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	93.23	78.59
HORVU5Hr1G031470.6	Barley	endoplasmic reticulum, golgi, mitochondrion, plastid	89.48	76.05
TraesCS4B01G082900.1	Wheat	mitochondrion	56.71	62.28
GSMUA_AchrUn_...	Banana	plastid	83.8	59.18
CDY64721	Canola	cytosol	13.3	45.08
CDX73074	Canola	cytosol	39.06	43.47
CDX96531	Canola	cytosol	38.94	43.34
CDX85552	Canola	cytosol	13.3	43.14
CDY53470	Canola	mitochondrion	40.51	42.24
CDY38846	Canola	plastid	47.28	42.0
CDX71686	Canola	plastid	47.28	41.95
CDY32646	Canola	plastid	47.28	41.86
CDY68892	Canola	mitochondrion, plastid	40.99	40.89
CDX68190	Canola	nucleus	40.15	40.74
CDX85823	Canola	nucleus	42.2	39.52
CDX90991	Canola	plastid	45.47	39.0
CDY56280	Canola	mitochondrion	45.83	38.91
CDX76768	Canola	mitochondrion	45.71	38.85
CDY26423	Canola	plastid	45.22	38.44
CDX69524	Canola	plastid	45.22	38.44
CDX85551	Canola	plastid	27.57	34.86

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:19.4.2.9.4	Gene3D:3.40.50.300	GO:A0A078DC67	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	EnsemblPlants:CDX84888	ProteinID:CDX84888	ProteinID:CDX84888.1	InterPro:ClpA/B	InterPro:ClpA/B_CS1
InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00142211001	InterPro:IPR001943	InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02151	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
ScanProsite:PS00871	PFscan:PS50151	PANTHER:PTHR43572	PANTHER:PTHR43572:SF19	SMART:SM00382	SMART:SM01086
SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI0004EEF582	InterPro:UVR_dom	SEG:seg	:

Description

BnaA03g13420D

Coordinates

chrLK031838:-:1788854..1792414

Molecular Weight (calculated)

92162.0 Da

IEP (calculated)

5.399

GRAVY (calculated)

-0.374

Length

827 amino acids

Sequence
(BLAST)

001: MFERFTEKAI KVIMLAQEEA RRLGHNFVGT EQILLGLIGE GTGIAAKVLK SMGINLKDAR VEVEKIIGRG SGFVAVEIPF TPRAKRVLEL SLEEARQLGH
101: NYIGSEHLLL GLLREGEGVA ARVLENLGAD PSNIRTQVIR MVGENNEVTA NVGGGSGSNK MPTLEEYGTN LTKLAEEGKL DPVVGRQPQI ERVVQILGRR
201: TKNNPCLIGE PGVGKTAIAE GLAQRIASGD VPETIEGKKV ITLDMGLLVA GTKYRGEFEE RLKKLMEEIK QSDEIILFID EVHTLIGAGA AEGAIDAANI
301: LKPALARGEL QCIGATTLDE YRKHIEKDPA LERRFQPVKV PEPTVDETIQ ILKGLRERYE IHHKLRYTDE SLVAAAQLSY QYISDRFLPD KAIDLIDEAG
401: SRVRLRHAQV PEEARELEKE LRQITKEKNE AVRGQDFEKA GTLRDREIEL RAEVSAIQAK GKEMSKAESE TGEEGPMVTE SDIQHIVSSW TGIPVEKVST
501: DESDRLLKME ETLHKRVIGQ DEAVKAISRA IRRARVGLKN PNRPIASFIF SGPTGVGKSE LAKALAAYYF GSEEAMIRLD MSEFMERHTV SKLIGSPPGY
601: VGYTEGGQLT EAVRRRPYTV VLFDEIEKAH PDVFNMMLQI LEDGRLTDSK GRTVDFKNTL LIMTSNVGSS VIEKGGRRID SSYNRIKSLV TEELKQYFRP
701: EFLNRLDEMI VFRQLTKLEV KEIADILLQE VFERLKKKEI ELQVTERFRE RVVDEGYNPS YGARPLRRAI MRLLEDSMAE KMLAREIKEG DSVIVDVDSE
801: GKVTVLNGGS GTPTTSLEEQ EDSLPVA

Best Arabidopsis Sequence Match ( AT5G50920.1 )
(BLAST)

001: MAMATRVLAQ STPPSLACYQ RNVPSRGSGR SRRSVKMMCS QLQVSGLRMQ GFMGLRGNNA LDTLGKSRQD FHSKVRQAMN VPKGKASRFT VKAMFERFTE
101: KAIKVIMLAQ EEARRLGHNF VGTEQILLGL IGEGTGIAAK VLKSMGINLK DARVEVEKII GRGSGFVAVE IPFTPRAKRV LELSLEEARQ LGHNYIGSEH
201: LLLGLLREGE GVAARVLENL GADPSNIRTQ VIRMVGENNE VTANVGGGSS SNKMPTLEEY GTNLTKLAEE GKLDPVVGRQ PQIERVVQIL GRRTKNNPCL
301: IGEPGVGKTA IAEGLAQRIA SGDVPETIEG KKVITLDMGL LVAGTKYRGE FEERLKKLME EIRQSDEIIL FIDEVHTLIG AGAAEGAIDA ANILKPALAR
401: GELQCIGATT LDEYRKHIEK DPALERRFQP VKVPEPTVDE TIQILKGLRE RYEIHHKLRY TDESLVAAAQ LSYQYISDRF LPDKAIDLID EAGSRVRLRH
501: AQVPEEAREL EKELRQITKE KNEAVRGQDF EKAGTLRDRE IELRAEVSAI QAKGKEMSKA ESETGEEGPM VTESDIQHIV SSWTGIPVEK VSTDESDRLL
601: KMEETLHKRI IGQDEAVKAI SRAIRRARVG LKNPNRPIAS FIFSGPTGVG KSELAKALAA YYFGSEEAMI RLDMSEFMER HTVSKLIGSP PGYVGYTEGG
701: QLTEAVRRRP YTVVLFDEIE KAHPDVFNMM LQILEDGRLT DSKGRTVDFK NTLLIMTSNV GSSVIEKGGR RIGFDLDYDE KDSSYNRIKS LVTEELKQYF
801: RPEFLNRLDE MIVFRQLTKL EVKEIADILL KEVFERLKKK EIELQVTERF KERVVDEGYN PSYGARPLRR AIMRLLEDSM AEKMLAREIK EGDSVIVDVD
901: AEGNVTVLNG GSGTPTTSLE EQEDSLPVA

Arabidopsis Description

CLPC1Chaperone protein ClpC1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FI56]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.