CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 8

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY39879

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15450.1	CDY39879	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023518.1-P	Field mustard	plastid	99.24	67.39
CDX90991	Canola	plastid	98.78	67.01
CDX69524	Canola	plastid	95.57	64.23
AT5G15450.1	Thale cress	plastid	94.95	64.15
CDY26423	Canola	plastid	95.11	63.93
VIT_14s0108g01500.t01	Wine grape	plastid	83.64	56.05
KRH01254	Soybean	nucleus, plastid	83.33	55.95
KRH44979	Soybean	nucleus, plastid	82.72	55.54
PGSC0003DMT400003652	Potato	cytosol, plastid	82.57	55.16
Solyc02g088610.2.1	Tomato	plastid	82.42	55.0
GSMUA_Achr6P16670_001	Banana	plastid	78.75	54.96
KRG93616	Soybean	nucleus	82.11	54.91
KRH18417	Soybean	nucleus	81.8	54.7
Os03t0426900-01	Rice	plastid	79.97	53.48
Zm00001d047302_P002	Maize	plastid	78.75	52.87
Zm00001d029557_P001	Maize	plastid	79.05	52.86
TraesCSU01G131300.1	Wheat	plastid	77.68	52.32
EER94678	Sorghum	plastid	78.59	52.29
TraesCS4B01G380800.1	Wheat	plastid	77.83	52.21
TraesCS5A01G547300.1	Wheat	golgi, plastid	77.52	52.05
HORVU4Hr1G090440.2	Barley	plastid	77.68	48.02
CDX76768	Canola	mitochondrion	66.82	44.91
CDY56280	Canola	mitochondrion	66.67	44.76
CDY53470	Canola	mitochondrion	43.43	35.81
CDY68892	Canola	mitochondrion, plastid	45.26	35.71
CDX85823	Canola	nucleus	40.98	30.35
CDX73074	Canola	cytosol	34.4	30.28
CDX96531	Canola	cytosol	34.25	30.15
CDX68190	Canola	nucleus	36.7	29.45
CDX84888	Canola	cytosol	34.86	27.57
CDY64710	Canola	cytosol	34.56	27.49
CDY45800	Canola	plastid	35.93	25.52
CDY05878	Canola	mitochondrion	35.78	25.11
CDX83052	Canola	mitochondrion	35.47	25.03
CDX68504	Canola	mitochondrion	35.47	25.0
CDX71686	Canola	plastid	31.35	22.0
CDY38846	Canola	plastid	31.19	21.91
CDY32646	Canola	plastid	31.04	21.73
CDX85552	Canola	cytosol	0.92	2.35
CDY64721	Canola	cytosol	0.61	1.64

Protein Annotations

Gene3D:1.10.1780.10	MapMan:26.4.2.4	Gene3D:3.40.50.300	GO:A0A078D8I5	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
EnsemblPlants:CDX85551	ProteinID:CDX85551	ProteinID:CDX85551.1	InterPro:ClpA/B_CS1	InterPro:Clp_N	InterPro:Clp_N_dom_sf
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150
GO:GO:0008152	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00143267001	InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF02861	ScanProsite:PS00870	PANTHER:PTHR11638	PANTHER:PTHR11638:SF144	SMART:SM00382	SUPFAM:SSF52540
SUPFAM:SSF81923	UniParc:UPI0004EE442E	SEG:seg	:	:	:

Description

BnaA02g02620D

Coordinates

chrLK031842:+:605432..608682

Molecular Weight (calculated)

73776.5 Da

IEP (calculated)

7.128

GRAVY (calculated)

-0.482

Length

654 amino acids

Sequence
(BLAST)

001: MATTATSAFS GVIGVGSESR KVSTFSHLQP SVAFPAKPNS FKSLKLKHSA RLTRRLEHRP FVVRCEASSN GRLTQQEFTE MAWQSIVSSP DVAKENKQQI
101: VETEHLMKAL LEQKNGLARR IFSKIGVDNT KVLEATEKFI QRQPKVYGES AGSMLGRDLE GLFERARKYK KDLGDSYVSV EHLVLAFAQD KRFGKQLFKD
201: FQISEKSLKT AIESIRGKQS VIDQDPEGKY EALEKYGKDL TAMAREGKLD PVIGRDDEIR RCIQILSRRT KNNPVLIGEP GVGKTAISEG LAQRIVQGDV
301: PQALMNRKLI SLDMGALIAG AKYRGEFEDR LKAVLKEVTD SEGQIILFID EIHTVVGAGA TNGAMDAGNL LKPMLGRGEL RCIGATTLDE YRKYIEKDPA
401: LERRFQQVYV DQPTVEDTIS ILRGLRERYE LHHGVRISDS ALVEAAILSD RYISGRFLPD KAIDLVDEAA AKLKMEITSK PTALDELDRA VIKLEMERLS
501: LTNDTDKASR ERLSRIETEL LSLKEKQAEL TQQWEHERSV MSRLQSIKEE IDRVNLEIQQ AEREYDLNRA AELKYGSLNS LQRQLNEAEK ELDEYLSSGK
601: SMFREEVLGS DIAEIVSKWT GIPVSKLQQS ERDKLLHLEE ELHKQLGYLI LAVR

Best Arabidopsis Sequence Match ( AT1G74310.1 )
(BLAST)

001: MNPEKFTHKT NETIATAHEL AVNAGHAQFT PLHLAGALIS DPTGIFPQAI SSAGGENAAQ SAERVINQAL KKLPSQSPPP DDIPASSSLI KVIRRAQAAQ
101: KSRGDTHLAV DQLIMGLLED SQIRDLLNEV GVATARVKSE VEKLRGKEGK KVESASGDTN FQALKTYGRD LVEQAGKLDP VIGRDEEIRR VVRILSRRTK
201: NNPVLIGEPG VGKTAVVEGL AQRIVKGDVP NSLTDVRLIS LDMGALVAGA KYRGEFEERL KSVLKEVEDA EGKVILFIDE IHLVLGAGKT EGSMDAANLF
301: KPMLARGQLR CIGATTLEEY RKYVEKDAAF ERRFQQVYVA EPSVPDTISI LRGLKEKYEG HHGVRIQDRA LINAAQLSAR YITGRHLPDK AIDLVDEACA
401: NVRVQLDSQP EEIDNLERKR MQLEIELHAL EREKDKASKA RLIEVRKELD DLRDKLQPLT MKYRKEKERI DEIRRLKQKR EELMFSLQEA ERRYDLARAA
501: DLRYGAIQEV ESAIAQLEGT SSEENVMLTE NVGPEHIAEV VSRWTGIPVT RLGQNEKERL IGLADRLHKR VVGQNQAVNA VSEAILRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDENLL VRIDMSEYME QHSVSRLIGA PPGYVGHEEG GQLTEAVRRR PYCVILFDEV EKAHVAVFNT LLQVLDDGRL
701: TDGQGRTVDF RNSVIIMTSN LGAEHLLAGL TGKVTMEVAR DCVMREVRKH FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVAVRLAE RGVALAVTDA
801: ALDYILAESY DPVYGARPIR RWMEKKVVTE LSKMVVREEI DENSTVYIDA GAGDLVYRVE SGGLVDASTG KKSDVLIHIA NGPKRSDAAQ AVKKMRIEEI
901: EDDDNEEMIE D

Arabidopsis Description

CLPB1Chaperone protein ClpB1 [Source:UniProtKB/Swiss-Prot;Acc:P42730]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.