CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY39879

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15450.1	CDY39879	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008698.1-P	Field mustard	plastid	99.38	99.38
CDX69524	Canola	plastid	99.38	99.38
CDX90991	Canola	plastid	94.55	95.44
AT5G15450.1	Thale cress	plastid	94.66	95.14
CDX85551	Canola	plastid	63.93	95.11
CDX85552	Canola	cytosol	24.87	94.9
KRH01254	Soybean	nucleus, plastid	83.86	83.78
KRH44979	Soybean	nucleus, plastid	83.56	83.47
VIT_14s0108g01500.t01	Wine grape	plastid	83.14	82.89
PGSC0003DMT400003652	Potato	cytosol, plastid	82.73	82.23
GSMUA_Achr6P16670_001	Banana	plastid	79.14	82.18
Solyc02g088610.2.1	Tomato	plastid	82.63	82.04
KRH18417	Soybean	nucleus	82.32	81.9
KRG93616	Soybean	nucleus	82.22	81.8
Os03t0426900-01	Rice	plastid	79.24	78.83
Zm00001d047302_P002	Maize	plastid	78.42	78.34
Zm00001d029557_P001	Maize	plastid	78.73	78.32
TraesCSU01G131300.1	Wheat	plastid	77.6	77.75
EER94678	Sorghum	plastid	78.42	77.62
TraesCS4B01G380800.1	Wheat	plastid	77.6	77.44
TraesCS5A01G547300.1	Wheat	golgi, plastid	77.49	77.41
HORVU4Hr1G090440.2	Barley	plastid	77.6	71.36
CDX76768	Canola	mitochondrion	65.78	65.78
CDY56280	Canola	mitochondrion	65.67	65.61
CDY53470	Canola	mitochondrion	49.02	60.15
CDY64721	Canola	cytosol	15.01	59.84
CDY68892	Canola	mitochondrion, plastid	50.26	58.99
CDX96531	Canola	cytosol	39.16	51.28
CDX73074	Canola	cytosol	39.16	51.28
CDX68190	Canola	nucleus	41.32	49.33
CDX85823	Canola	nucleus	44.3	48.81
CDY64710	Canola	cytosol	38.23	45.26
CDX84888	Canola	cytosol	38.44	45.22
CDY45800	Canola	plastid	39.05	41.26
CDX83052	Canola	mitochondrion	38.95	40.88
CDX68504	Canola	mitochondrion	38.95	40.84
CDY05878	Canola	mitochondrion	38.95	40.67
CDX71686	Canola	plastid	35.56	37.12
CDY38846	Canola	plastid	35.46	37.06
CDY32646	Canola	plastid	35.46	36.94

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:26.4.2.4	Gene3D:3.40.50.300	GO:A0A078GP33	UniProt:A0A078GP33
InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	EnsemblPlants:CDY26423	ProteinID:CDY26423	ProteinID:CDY26423.1	InterPro:Chaperonin_ClpB
InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009408	GO:GO:0009628	GO:GO:0009987	GO:GO:0016485	GO:GO:0019538	GO:GO:0042026
EnsemblPlantsGene:GSBRNA2T00035213001	InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724
PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF144
SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	TIGRFAMs:TIGR03346	UniParc:UPI0004EE46C4
SEG:seg	:	:	:	:	:

Description

BnaC09g42450DBnaC09g42450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GP33]

Coordinates

chrLK032190:-:64632..68715

Molecular Weight (calculated)

109159.0 Da

IEP (calculated)

5.752

GRAVY (calculated)

-0.447

Length

973 amino acids

Sequence
(BLAST)

001: MATAKTTATA AFSSIVGGVG SDSRKVSSFS HLQPSVAFPA KPSSFKALKL KQSARLTRRL QHQPFVVRCE ASSNGRLTQQ EFTEMAWQSI VSSPDVAKEN
101: KQQIVETEHL MKALLEQKNG LARRIFSKIG VDNTKVLEAT DKFIQRQPKV YGEAAGSMLG RDLEGLFQRA RQYKKDLGDS YVSVEHLVLA FVDDKRFGKQ
201: LFRDFQISEK SLKTAIESIR GKQSVIDQDP EGKYEALEKY GKDLTAMARE GKLDPVIGRD DEIRRCIQIL SRRTKNNPVL IGEPGVGKTA ISEGLAQRIV
301: QGDVPQALMN RKLISLDMGA LIAGAKYRGE FEDRLKAVLK EVTDSEGQTI LFIDEIHTVV GAGATNGAMD AGNLLKPMLG RGELRCIGAT TLDEYRKYIE
401: KDPALERRFQ QVYVDQPTVE DTVSILRGLR ERYELHHGVR ISDSALVEAA ILSDRYISGR FLPDKAIDLV DEAAAKLKME ITSKPTALDE LDRAVIKLEM
501: ERLSLTNDTD KASRERLNRI ETELVLLKEK QAELTEQWEH ERSVMSRLQS IKEEIDRVSL EIQQAEREYD LNRAAELKYG SLNSLQRQLN EAEKELNEYL
601: SSGKSMFREE VLGSDIAEIV SKWTGIPVSK LQQSDRDKLL HLEEELHRRV IGQNPAVTAV AEAIQRSRAG LSDPGRPIAS FMFMGPTGVG KTELAKALAS
701: YLFNTEEALV RIDMSEYMEK HAVSRLIGAP PGYVGYEEGG QLTEVVRRRP YSVILFDEIE KAHGDVFNVF LQILDDGRVT DSQGRTVSFT NTVIIMTSNV
801: GSQYILNSNA DDEGSELGYE TIKQRVMDAA RSIFRPEFMN RVDEYIVFQP LDREQINSIV RLQLARVQKR IADRKMKIEI TDAAVDLLGS LGYDPNYGAR
901: PVKRVIQQNI ENELAKGILR GDFKEEDGIL IDTEVTAFSN GQLPQQKLTF KKITSETADA EKEEEEAFSK QSN

Best Arabidopsis Sequence Match ( AT5G15450.1 )
(BLAST)

001: MATATTTATA AFSGVVSVGT ETRRIYSFSH LQPSAAFPAK PSSFKSLKLK QSARLTRRLD HRPFVVRCEA SSSNGRLTQQ EFTEMAWQSI VSSPDVAKEN
101: KQQIVETEHL MKALLEQKNG LARRIFSKIG VDNTKVLEAT EKFIQRQPKV YGDAAGSMLG RDLEALFQRA RQFKKDLKDS YVSVEHLVLA FADDKRFGKQ
201: LFKDFQISER SLKSAIESIR GKQSVIDQDP EGKYEALEKY GKDLTAMARE GKLDPVIGRD DEIRRCIQIL SRRTKNNPVL IGEPGVGKTA ISEGLAQRIV
301: QGDVPQALMN RKLISLDMGA LIAGAKYRGE FEDRLKAVLK EVTDSEGQII LFIDEIHTVV GAGATNGAMD AGNLLKPMLG RGELRCIGAT TLDEYRKYIE
401: KDPALERRFQ QVYVDQPTVE DTISILRGLR ERYELHHGVR ISDSALVEAA ILSDRYISGR FLPDKAIDLV DEAAAKLKME ITSKPTALDE LDRSVIKLEM
501: ERLSLTNDTD KASRERLNRI ETELVLLKEK QAELTEQWEH ERSVMSRLQS IKEEIDRVNL EIQQAEREYD LNRAAELKYG SLNSLQRQLN EAEKELNEYL
601: SSGKSMFREE VLGSDIAEIV SKWTGIPVSK LQQSERDKLL HLEEELHKRV VGQNPAVTAV AEAIQRSRAG LSDPGRPIAS FMFMGPTGVG KTELAKALAS
701: YMFNTEEALV RIDMSEYMEK HAVSRLIGAP PGYVGYEEGG QLTETVRRRP YSVILFDEIE KAHGDVFNVF LQILDDGRVT DSQGRTVSFT NTVIIMTSNV
801: GSQFILNNTD DDANELSYET IKERVMNAAR SIFRPEFMNR VDEYIVFKPL DREQINRIVR LQLARVQKRI ADRKMKINIT DAAVDLLGSL GYDPNYGARP
901: VKRVIQQNIE NELAKGILRG DFKEEDGILI DTEVTAFSNG QLPQQKLTFK KIESETADAE QEEAAFSK

Arabidopsis Description

CLPB3Chaperone protein ClpB3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF37]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.