Factsheet for TraesCS4B01G380800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS5A01G225500.1
TraesCS5A01G225600.1
TraesCS5B01G224000.1
TraesCS5B01G224100.1
TraesCS5D01G232700.1
TraesCS5D01G232800.1
TraesCS5D01G232900.1
TraesCS6A01G146900.1
TraesCS6B01G175100.2
TraesCS6D01G136200.1
TraesCS7A01G508700.1
TraesCS7A01G508800.1
TraesCS7A01G509000.1
TraesCS7B01G418400.1
TraesCS7B01G418500.2
TraesCS7B01G418600.1
TraesCS7B01G419400.1
TraesCS7D01G497300.1
TraesCS7D01G497400.1
TraesCS7D01G497700.1
TraesCS7D01G497800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15450.1	TraesCS5A01G225500.1	AT2G25000.1	21798944
AT5G15450.1	TraesCS5A01G225600.1	AT2G25000.1	21798944
AT5G15450.1	TraesCS5B01G224000.1	AT2G25000.1	21798944
AT5G15450.1	TraesCS5B01G224100.1	AT2G25000.1	21798944
AT5G15450.1	TraesCS5D01G232700.1	AT2G25000.1	21798944
AT5G15450.1	TraesCS5D01G232800.1	AT2G25000.1	21798944
AT5G15450.1	TraesCS5D01G232900.1	AT2G25000.1	21798944
AT5G15450.1	TraesCS6A01G146900.1	AT2G25000.1	21798944
AT5G15450.1	TraesCS6B01G175100.2	AT2G25000.1	21798944
AT5G15450.1	TraesCS6D01G136200.1	AT2G25000.1	21798944
AT5G15450.1	TraesCS7A01G508700.1	AT2G25000.1	21798944
AT5G15450.1	TraesCS7A01G508800.1	AT2G25000.1	21798944
AT5G15450.1	TraesCS7A01G509000.1	AT2G25000.1	21798944
AT5G15450.1	TraesCS7B01G418400.1	AT2G25000.1	21798944
AT5G15450.1	TraesCS7B01G418500.2	AT2G25000.1	21798944
AT5G15450.1	TraesCS7B01G418600.1	AT2G25000.1	21798944
AT5G15450.1	TraesCS7B01G419400.1	AT2G25000.1	21798944
AT5G15450.1	TraesCS7D01G497300.1	AT2G25000.1	21798944
AT5G15450.1	TraesCS7D01G497400.1	AT2G25000.1	21798944
AT5G15450.1	TraesCS7D01G497700.1	AT2G25000.1	21798944
AT5G15450.1	TraesCS7D01G497800.1	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G131300.1	Wheat	plastid	98.87	99.28
TraesCS5A01G547300.1	Wheat	golgi, plastid	98.77	98.87
Os03t0426900-01	Rice	plastid	91.28	91.0
Zm00001d047302_P002	Maize	plastid	90.05	90.14
Zm00001d029557_P001	Maize	plastid	90.26	89.98
HORVU4Hr1G090440.2	Barley	plastid	97.54	89.89
EER94678	Sorghum	plastid	90.15	89.42
GSMUA_Achr6P16670_001	Banana	plastid	77.33	80.47
VIT_14s0108g01500.t01	Wine grape	plastid	79.08	79.0
KRH18417	Soybean	nucleus	78.87	78.63
Bra023518.1-P	Field mustard	plastid	77.64	78.61
AT5G15450.1	Thale cress	plastid	77.95	78.51
KRG93616	Soybean	nucleus	78.67	78.43
CDX90991	Canola	plastid	77.23	78.11
KRH44979	Soybean	nucleus, plastid	77.95	78.03
PGSC0003DMT400003652	Potato	cytosol, plastid	78.26	77.94
KRH01254	Soybean	nucleus, plastid	77.85	77.93
CDX85551	Canola	plastid	52.21	77.83
Solyc02g088610.2.1	Tomato	plastid	78.05	77.65
Bra008698.1-P	Field mustard	plastid	77.44	77.6
CDX69524	Canola	plastid	77.44	77.6
CDY26423	Canola	plastid	77.44	77.6
CDX85552	Canola	cytosol	20.0	76.47
TraesCS6B01G174500.1	Wheat	mitochondrion	65.44	64.38
TraesCS1B01G352400.1	Wheat	cytosol, golgi	45.33	48.2
TraesCS4B01G046000.1	Wheat	cytosol	32.72	48.11
TraesCS5B01G554000.1	Wheat	cytosol	28.31	48.0
TraesCS3B01G308100.1	Wheat	cytosol	44.51	47.54
TraesCS7B01G357500.1	Wheat	cytosol	31.28	46.64
TraesCS5B01G422900.1	Wheat	cytosol	29.64	46.46
TraesCS5B01G422800.1	Wheat	cytosol	31.49	45.89
TraesCS4B01G393100.1	Wheat	cytosol	42.26	45.63
TraesCS7B01G357600.2	Wheat	cytosol	31.38	45.4
TraesCS5B01G537100.1	Wheat	mitochondrion	31.38	45.33
TraesCS4B01G082900.1	Wheat	mitochondrion	33.85	43.82
TraesCS2B01G158300.1	Wheat	cytosol, endoplasmic reticulum, mitochondrion	30.87	43.62
TraesCS5B01G423000.1	Wheat	cytosol	30.56	43.25
TraesCS1B01G315600.1	Wheat	cytosol	32.51	43.19
TraesCS7B01G357400.1	Wheat	cytosol	29.54	43.18
TraesCS4B01G090300.1	Wheat	mitochondrion	33.95	42.6
TraesCS2B01G304200.1	Wheat	golgi	39.59	42.09
TraesCS5B01G112500.1	Wheat	plastid	39.69	42.07
TraesCS6B01G233800.1	Wheat	plastid	39.49	42.03
TraesCS5B01G070000.1	Wheat	mitochondrion	19.49	40.08
TraesCS4B01G083000.1	Wheat	plastid	38.15	39.57
TraesCS6B01G278000.1	Wheat	cytosol	32.51	38.61
TraesCS5B01G321800.1	Wheat	plastid	36.51	38.4
TraesCS2B01G307500.1	Wheat	plastid	36.62	37.82

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:26.4.2.4	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
InterPro:Chaperonin_ClpB	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N
InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009408	GO:GO:0009507	GO:GO:0009532	GO:GO:0009536	GO:GO:0009570
GO:GO:0009628	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0042026
InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431
PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF144	SMART:SM00382
SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	TIGRFAMs:TIGR03346	EnsemblPlantsGene:TraesCS4B01G380800	EnsemblPlants:TraesCS4B01G380800.1
TIGR:cd00009	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:660723123..660728928

Molecular Weight (calculated)

108677.0 Da

IEP (calculated)

7.088

GRAVY (calculated)

-0.434

Length

975 amino acids

Sequence
(BLAST)

001: MATAPPPALA ADLHISSYPA AAPAPAVAAA AWGSSRRAAG PSSTRVALSA ARGRGRLSPV VGTGRPALSV RCNASSRDGR ITQQEFTEMA WQSIVLAPEV
101: AKESKHQIVE TEHLMKSLLE QRNGLARRIF SKAGVDNTRL LDATEKFIQR QPKVLGEDPG SMLGRDLEAL IQRARNFKKE YGDSFVSVEH IVLGFADDKR
201: FGRQLFKDFQ ITVESLKTAI ESIRGKQNVI DQDPEGKYEA LDKYGKDLTA MARQGKLDPV IGRDDEIRRC IQILSRRTKN NPVLIGEPGV GKTAIAEGLA
301: QRIVQGDVPQ ALTNRRLITL DMGALIAGAK YRGEFEDRLK AVLKEVTDSD GQVVLFIDEI HTVVGAGATS GAMDAGNLLK PMLGRGELRC IGATTLDEYR
401: KYIEKDPALE RRFQQVYVDQ PTVEDTVSIL RGLRERYELH HGVRISDSAL VAAALLSDRY ISGRFLPDKA IDLVDESAAK LKMEITSKPT ALDEIDRSVL
501: KLEMERLSLT NDTDKASRDR LSRIEAELSL LKERQKGLTE QWEREKSVMT KIQSIKEEID RLNVEIQQAE REYDLNRAAE LKYGSLNALQ RDLQKTEDEL
601: NEYQSSGKSM LREEVTQDDI AEIVSRWTGI PVSKLKQSDR EKLLYLEDEL HKRVVGQDPA VKAVAEAIQR SRAGLSDPNR PIASFMFMGP TGVGKTELAK
701: ALASFMFNTE DAVVRIDMSE YMEKHSVSRL IGAPPGYVGY EEGGQLTEAV RRRPYSVVLF DEIEKAHSDV FNVFLQILDD GRVTDSQGRK VSFTNSIIIM
801: TSNVGSQYIL NMDEEGGATD SAYESMKKRV MDAARSVFRP EFMNRVDEYI VFKPLERKQI NSIVKLQLAR VQKRIADRKI KLDVSPAAIE FLGSLGYDPN
901: YGARPVKRVL QQYVENELAK GILRGEFKDE DSISVDTQVT VPSNGKLPQQ KLVFRKTNEE SKPAAAQDEK FLPTV

Best Arabidopsis Sequence Match ( AT5G15450.1 )
(BLAST)

001: MATATTTATA AFSGVVSVGT ETRRIYSFSH LQPSAAFPAK PSSFKSLKLK QSARLTRRLD HRPFVVRCEA SSSNGRLTQQ EFTEMAWQSI VSSPDVAKEN
101: KQQIVETEHL MKALLEQKNG LARRIFSKIG VDNTKVLEAT EKFIQRQPKV YGDAAGSMLG RDLEALFQRA RQFKKDLKDS YVSVEHLVLA FADDKRFGKQ
201: LFKDFQISER SLKSAIESIR GKQSVIDQDP EGKYEALEKY GKDLTAMARE GKLDPVIGRD DEIRRCIQIL SRRTKNNPVL IGEPGVGKTA ISEGLAQRIV
301: QGDVPQALMN RKLISLDMGA LIAGAKYRGE FEDRLKAVLK EVTDSEGQII LFIDEIHTVV GAGATNGAMD AGNLLKPMLG RGELRCIGAT TLDEYRKYIE
401: KDPALERRFQ QVYVDQPTVE DTISILRGLR ERYELHHGVR ISDSALVEAA ILSDRYISGR FLPDKAIDLV DEAAAKLKME ITSKPTALDE LDRSVIKLEM
501: ERLSLTNDTD KASRERLNRI ETELVLLKEK QAELTEQWEH ERSVMSRLQS IKEEIDRVNL EIQQAEREYD LNRAAELKYG SLNSLQRQLN EAEKELNEYL
601: SSGKSMFREE VLGSDIAEIV SKWTGIPVSK LQQSERDKLL HLEEELHKRV VGQNPAVTAV AEAIQRSRAG LSDPGRPIAS FMFMGPTGVG KTELAKALAS
701: YMFNTEEALV RIDMSEYMEK HAVSRLIGAP PGYVGYEEGG QLTETVRRRP YSVILFDEIE KAHGDVFNVF LQILDDGRVT DSQGRTVSFT NTVIIMTSNV
801: GSQFILNNTD DDANELSYET IKERVMNAAR SIFRPEFMNR VDEYIVFKPL DREQINRIVR LQLARVQKRI ADRKMKINIT DAAVDLLGSL GYDPNYGARP
901: VKRVIQQNIE NELAKGILRG DFKEEDGILI DTEVTAFSNG QLPQQKLTFK KIESETADAE QEEAAFSK

Arabidopsis Description

CLPB3Chaperone protein ClpB3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF37]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.