Factsheet for VIT_14s0108g01500.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_04s0008g05760.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15450.1	VIT_04s0008g05760.t01	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44979	Soybean	nucleus, plastid	87.6	87.78
KRH01254	Soybean	nucleus, plastid	87.6	87.78
PGSC0003DMT400003652	Potato	cytosol, plastid	87.81	87.54
Solyc02g088610.2.1	Tomato	plastid	87.6	87.24
KRH18417	Soybean	nucleus	86.89	86.71
KRG93616	Soybean	nucleus	86.78	86.61
Bra023518.1-P	Field mustard	plastid	83.81	84.94
GSMUA_Achr6P16670_001	Banana	plastid	81.35	84.74
CDX90991	Canola	plastid	83.4	84.44
CDX85552	Canola	cytosol	22.03	84.31
CDX85551	Canola	plastid	56.05	83.64
AT5G15450.1	Thale cress	plastid	82.68	83.37
CDX69524	Canola	plastid	83.09	83.35
Bra008698.1-P	Field mustard	plastid	83.09	83.35
CDY26423	Canola	plastid	82.89	83.14
Zm00001d029557_P001	Maize	plastid	81.05	80.88
Zm00001d047302_P002	Maize	plastid	80.64	80.8
EER94678	Sorghum	plastid	80.94	80.37
Os03t0426900-01	Rice	plastid	80.43	80.27
TraesCSU01G131300.1	Wheat	plastid	79.1	79.51
TraesCS5A01G547300.1	Wheat	golgi, plastid	79.1	79.26
TraesCS4B01G380800.1	Wheat	plastid	79.0	79.08
HORVU4Hr1G090440.2	Barley	plastid	79.2	73.06
VIT_04s0008g05870.t01	Wine grape	mitochondrion	66.5	67.46
VIT_07s0005g05810.t01	Wine grape	cytosol	4.41	63.24
VIT_16s0100g00180.t01	Wine grape	cytosol	4.41	63.24
VIT_14s0068g01220.t01	Wine grape	cytosol	30.53	52.74
VIT_17s0000g07190.t01	Wine grape	nucleus	46.31	49.62
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	39.86	39.65
VIT_19s0014g00020.t01	Wine grape	plastid	35.25	36.36

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	EntrezGene:100252611	wikigene:100252611	MapMan:26.4.2.4	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	EMBL:AM440710	InterPro:ATPase_AAA_core	ProteinID:CAN69514	ProteinID:CAN69514.1	ProteinID:CCB47593
ProteinID:CCB47593.1	InterPro:Chaperonin_ClpB	InterPro:ClpA/B	InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C
InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	UniProt:F6H5M5	EMBL:FN595239	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009408	GO:GO:0009507
GO:GO:0009536	GO:GO:0009628	GO:GO:0009987	GO:GO:0016485	GO:GO:0019538	GO:GO:0042026
InterPro:IPR036628	EntrezGene:LOC100252611	wikigene:LOC100252611	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861
PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR11638
PANTHER:PTHR11638:SF144	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	TIGR:TC52092
TIGR:TC66115	TIGRFAMs:TIGR03346	UniParc:UPI0001984CB0	ArrayExpress:VIT_14s0108g01500	EnsemblPlantsGene:VIT_14s0108g01500	EnsemblPlants:VIT_14s0108g01500.t01
unigene:Vvi.6971	RefSeq:XP_002284243	RefSeq:XP_002284243.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr14:-:30039588..30047372

Molecular Weight (calculated)

109841.0 Da

IEP (calculated)

6.546

GRAVY (calculated)

-0.446

Length

976 amino acids

Sequence
(BLAST)

001: MAATTSFSRV HLRFPTNCSN GPALSPHPRL SLNLSARRRS LKALNSLRLK QNDVFLSKRF AGSGKCPRSF VVRCDASGGR ITQQDFTEMA WQAIVSSPEV
101: AKENKHQIVE TEHLMKALLE QKNGLARRIF SKAGVDNTRL LDATDKFIQR QPKVIGESAG SMLGRDLESL IQRAREYKKE YGDSFVSVEH LVLAFVQDQR
201: FGKQLFKDFQ ISQKALKSAI EAIRGRQQVI DQDPEGKYEA LEKYGKDLTA MAKAGKLDPV IGRDDEIRRC IQILSRRTKN NPVLIGEPGV GKTAISEGLA
301: QRIVQGDVPQ ALMNRKLISL DMGALIAGAK FRGEFEDRLK AVLKEVTESD GQTILFIDEI HTVVGAGATN GAMDAGNLLK PMLGRGELRC IGATTLDEYR
401: KYIEKDPALE RRFQQVYVDQ PTVEDTISIL RGLRERYELH HGVRISDSAL VEAAILSDRY ISGRFLPDKA IDLVDEAAAK LKMEITSKPT ALDEINRSVL
501: KLEMERLSLT NDTDKASKDR LSRLEAELSL LKEKQAELSE QWEHEKSVMT RLQSIKEEID RVNLEIQQAE REYDLNRAAE LKYGSLNSLQ RQLENAEKEL
601: DEYMKSGKSM LREEVTGNDI AEIVSKWTGI PVSKLQQSER EKLLHLEEEL HKRVVGQDPA VRSVAEAIQR SRAGLSDPHR PIASFMFMGP TGVGKTELAK
701: ALASYMFNTE EALVRIDMSE YMEKHAVSRL IGAPPGYVGY EEGGQLTETV RRRPYAVILF DEIEKAHSDV FNVFLQILDD GRVTDSQGRT VSFTNTVIIM
801: TSNVGSQYIL NMDDETLPKE TAYETIKQRV MDAARSIFRP EFMNRVDEYI VFQPLDRDQI SSIVKLQLER VQLRLADRKM KLQVTETAIQ LLGSLGYDPN
901: YGARPVKRVI QQNVENELAK GILRGEFKDE DTVLIDTEVT AFSNGQLPQQ KLILRKLESD SDTPAAEGQE AFSQTI

Best Arabidopsis Sequence Match ( AT5G15450.1 )
(BLAST)

001: MATATTTATA AFSGVVSVGT ETRRIYSFSH LQPSAAFPAK PSSFKSLKLK QSARLTRRLD HRPFVVRCEA SSSNGRLTQQ EFTEMAWQSI VSSPDVAKEN
101: KQQIVETEHL MKALLEQKNG LARRIFSKIG VDNTKVLEAT EKFIQRQPKV YGDAAGSMLG RDLEALFQRA RQFKKDLKDS YVSVEHLVLA FADDKRFGKQ
201: LFKDFQISER SLKSAIESIR GKQSVIDQDP EGKYEALEKY GKDLTAMARE GKLDPVIGRD DEIRRCIQIL SRRTKNNPVL IGEPGVGKTA ISEGLAQRIV
301: QGDVPQALMN RKLISLDMGA LIAGAKYRGE FEDRLKAVLK EVTDSEGQII LFIDEIHTVV GAGATNGAMD AGNLLKPMLG RGELRCIGAT TLDEYRKYIE
401: KDPALERRFQ QVYVDQPTVE DTISILRGLR ERYELHHGVR ISDSALVEAA ILSDRYISGR FLPDKAIDLV DEAAAKLKME ITSKPTALDE LDRSVIKLEM
501: ERLSLTNDTD KASRERLNRI ETELVLLKEK QAELTEQWEH ERSVMSRLQS IKEEIDRVNL EIQQAEREYD LNRAAELKYG SLNSLQRQLN EAEKELNEYL
601: SSGKSMFREE VLGSDIAEIV SKWTGIPVSK LQQSERDKLL HLEEELHKRV VGQNPAVTAV AEAIQRSRAG LSDPGRPIAS FMFMGPTGVG KTELAKALAS
701: YMFNTEEALV RIDMSEYMEK HAVSRLIGAP PGYVGYEEGG QLTETVRRRP YSVILFDEIE KAHGDVFNVF LQILDDGRVT DSQGRTVSFT NTVIIMTSNV
801: GSQFILNNTD DDANELSYET IKERVMNAAR SIFRPEFMNR VDEYIVFKPL DREQINRIVR LQLARVQKRI ADRKMKINIT DAAVDLLGSL GYDPNYGARP
901: VKRVIQQNIE NELAKGILRG DFKEEDGILI DTEVTAFSNG QLPQQKLTFK KIESETADAE QEEAAFSK

Arabidopsis Description

CLPB3Chaperone protein ClpB3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF37]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.