Factsheet for VIT_17s0000g07190.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56831	Soybean	endoplasmic reticulum	89.9	89.9
CDX85823	Canola	nucleus	85.84	88.56
Solyc03g115230.2.1	Tomato	plastid	88.04	88.04
Bra015922.1-P	Field mustard	nucleus	88.04	88.04
CDX73074	Canola	cytosol	71.79	88.02
CDX96531	Canola	cytosol	71.79	88.02
KRH54672	Soybean	endoplasmic reticulum	72.56	87.78
PGSC0003DMT400063352	Potato	nucleus	87.82	87.72
Bra003807.1-P	Field mustard	nucleus	84.63	87.42
GSMUA_Achr1P13710_001	Banana	cytosol	80.79	86.49
CDX68190	Canola	nucleus	76.73	85.77
EES19828	Sorghum	nucleus	85.84	85.65
Os05t0519700-01	Rice	nucleus	85.73	85.64
Zm00001d038806_P001	Maize	nucleus	85.4	85.31
TraesCS3A01G274400.1	Wheat	cytosol	84.85	84.67
TraesCS3D01G273600.1	Wheat	cytosol	84.74	84.56
TraesCS3B01G308100.1	Wheat	cytosol	84.74	84.56
Solyc06g082560.1.1	Tomato	plastid	78.81	84.07
GSMUA_Achr3P16240_001	Banana	cytosol	78.49	83.92
TraesCS1D01G342100.1	Wheat	golgi	84.41	83.77
TraesCS1B01G352400.1	Wheat	cytosol, golgi	84.3	83.75
TraesCS1A01G340100.1	Wheat	nucleus	83.86	83.22
EES01468	Sorghum	nucleus	82.0	81.64
VIT_07s0005g05810.t01	Wine grape	cytosol	6.04	80.88
VIT_16s0100g00180.t01	Wine grape	cytosol	6.04	80.88
AT4G14670.1	Thale cress	cytosol	49.51	72.39
TraesCS4B01G393100.1	Wheat	cytosol	69.37	69.99
AT4G14675.1	Thale cress	cytosol	9.0	51.57
HORVU7Hr1G008950.1	Barley	cytosol, plastid	13.17	50.42
VIT_14s0068g01220.t01	Wine grape	cytosol	30.08	48.5
VIT_14s0108g01500.t01	Wine grape	plastid	49.62	46.31
VIT_04s0008g05870.t01	Wine grape	mitochondrion	46.76	44.28
VIT_17s0000g00340.t01	Wine grape	mitochondrion, plastid	39.96	37.1
VIT_19s0014g00020.t01	Wine grape	plastid	35.78	34.46

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	EntrezGene:100232966	wikigene:100232966	MapMan:26.4.2.3	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	ProteinID:AAX08108	ProteinID:AAX08108.1	EMBL:AM470127	InterPro:ATPase_AAA_core	EMBL:AY764155
ProteinID:CAN72669	ProteinID:CAN72669.1	ProteinID:CCB43039	ProteinID:CCB43039.1	InterPro:ClpA/B	InterPro:ClpA/B_CS1
InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	UniProt:F6GT15
EMBL:FN594950	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150
GO:GO:0008152	GO:GO:0019538	EntrezGene:HSP101	wikigene:HSP101	InterPro:IPR036628	InterPro:P-loop_NTPase
PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870
ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF146	SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540
SUPFAM:SSF81923	TIGR:TC51914	TIGR:TC56211	TIGR:TC60775	UniParc:UPI00015C8612	ArrayExpress:VIT_17s0000g07190
EnsemblPlantsGene:VIT_17s0000g07190	EnsemblPlants:VIT_17s0000g07190.t01	unigene:Vvi.1277	RefSeq:XP_010663020.1	SEG:seg	:

Description

No Description!

Coordinates

chr17:+:7995181..7998696

Molecular Weight (calculated)

101250.0 Da

IEP (calculated)

5.950

GRAVY (calculated)

-0.378

Length

911 amino acids

Sequence
(BLAST)

001: MNPEKFTHKT NETLAGAHEL AMNSGHAQLT PLHVAVALIT DPNGILRQAI IGAGGNEEAA NSVERVFNKA LKKLPSQSPP PDEIPVSTTL IKVVRRAQSS
101: QKSRGDTHLA VDQLILGLLE DSQIGDLLKE AGVSTSRVKS EVEKLRGKEG KKVESASGDT TFQALKTYGR DLVEQAGKLD PVIGRDEEIR RVIRILSRRT
201: KNNPVLIGEP GVGKTAVVEG LAQRIVRGDV PSNLAEVRLI ALDMGALVAG AKYRGEFEER LKSVLKEVEE AEGKVILFID EIHLVLGAGR TEGSMDAANL
301: FKPMLARGQL RCIGATTLEE YRKYVEKDAA FERRFQQVYV AEPSVPDTIS ILRGLKERYE GHHGVRIQDR ALVVAAQLSS RYITGRHLPD KAIDLVDEAC
401: ANVRVQLDSQ PEEIDNLERK RMQLEVELHA LEKEKDKASK ARLVEVRREL DDLRDKLQPL MMKYKKEKER IDELRRLKQK REELLFALQE AERRYDLARA
501: ADLRYGAIQE VEAAIANLEG TTDENMMLTE TVGPEQIAEV VSRWTGIPVT RLGQNDKERL IGLAERLHQR VVGQDQAVSA VAEAVLRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDENLL VRIDMSEYME QHSVSRLIGA PPGYVGHDEG GQLTEAVRRR PYSVVLFDEV EKAHIAVFNT LLQVLDDGRL
701: TDGQGRTVDF TNTVIIMTSN LGAEHLLSGL VGKCTMQDAR DRVMQEVRRH FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVASRLAE RGIALAVTDA
801: ALDVVLAESY DPVYGARPIR RWLEKKVVTE LSKMLIREEI DENSTVYIDA GVSGKGLAYR VENNGGLVNA STGQKSDVLI RIPNGPRSDA AQAVKKMKIE
901: EIEDEEDEMD L

Best Arabidopsis Sequence Match ( AT1G74310.1 )
(BLAST)

001: MNPEKFTHKT NETIATAHEL AVNAGHAQFT PLHLAGALIS DPTGIFPQAI SSAGGENAAQ SAERVINQAL KKLPSQSPPP DDIPASSSLI KVIRRAQAAQ
101: KSRGDTHLAV DQLIMGLLED SQIRDLLNEV GVATARVKSE VEKLRGKEGK KVESASGDTN FQALKTYGRD LVEQAGKLDP VIGRDEEIRR VVRILSRRTK
201: NNPVLIGEPG VGKTAVVEGL AQRIVKGDVP NSLTDVRLIS LDMGALVAGA KYRGEFEERL KSVLKEVEDA EGKVILFIDE IHLVLGAGKT EGSMDAANLF
301: KPMLARGQLR CIGATTLEEY RKYVEKDAAF ERRFQQVYVA EPSVPDTISI LRGLKEKYEG HHGVRIQDRA LINAAQLSAR YITGRHLPDK AIDLVDEACA
401: NVRVQLDSQP EEIDNLERKR MQLEIELHAL EREKDKASKA RLIEVRKELD DLRDKLQPLT MKYRKEKERI DEIRRLKQKR EELMFSLQEA ERRYDLARAA
501: DLRYGAIQEV ESAIAQLEGT SSEENVMLTE NVGPEHIAEV VSRWTGIPVT RLGQNEKERL IGLADRLHKR VVGQNQAVNA VSEAILRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDENLL VRIDMSEYME QHSVSRLIGA PPGYVGHEEG GQLTEAVRRR PYCVILFDEV EKAHVAVFNT LLQVLDDGRL
701: TDGQGRTVDF RNSVIIMTSN LGAEHLLAGL TGKVTMEVAR DCVMREVRKH FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVAVRLAE RGVALAVTDA
801: ALDYILAESY DPVYGARPIR RWMEKKVVTE LSKMVVREEI DENSTVYIDA GAGDLVYRVE SGGLVDASTG KKSDVLIHIA NGPKRSDAAQ AVKKMRIEEI
901: EDDDNEEMIE D

Arabidopsis Description

CLPB1Chaperone protein ClpB1 [Source:UniProtKB/Swiss-Prot;Acc:P42730]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.