CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96531	Canola	cytosol	81.09	96.37
CDX73074	Canola	cytosol	80.86	96.1
CDX68190	Canola	nucleus	87.54	94.85
AT1G74310.1	Thale cress	nucleus	94.45	91.55
VIT_17s0000g07190.t01	Wine grape	nucleus	88.56	85.84
KRH56831	Soybean	endoplasmic reticulum	87.66	84.96
KRH54672	Soybean	endoplasmic reticulum	71.35	83.67
Solyc03g115230.2.1	Tomato	plastid	85.05	82.44
GSMUA_Achr1P13710_001	Banana	cytosol	79.16	82.14
PGSC0003DMT400063352	Potato	nucleus	84.71	82.02
TraesCS3A01G274400.1	Wheat	cytosol	84.14	81.38
Zm00001d038806_P001	Maize	nucleus	83.92	81.25
Os05t0519700-01	Rice	nucleus	83.92	81.25
TraesCS3D01G273600.1	Wheat	cytosol	83.81	81.05
TraesCS3B01G308100.1	Wheat	cytosol	83.81	81.05
EES19828	Sorghum	nucleus	83.69	80.94
GSMUA_Achr3P16240_001	Banana	cytosol	77.92	80.75
TraesCS1D01G342100.1	Wheat	golgi	83.58	80.39
TraesCS1B01G352400.1	Wheat	cytosol, golgi	83.47	80.37
TraesCS1A01G340100.1	Wheat	nucleus	83.01	79.85
EES01468	Sorghum	nucleus	81.43	78.58
Solyc06g082560.1.1	Tomato	plastid	75.88	78.45
TraesCS4B01G393100.1	Wheat	cytosol	69.08	67.55
HORVU7Hr1G008950.1	Barley	cytosol, plastid	13.59	50.42
CDX85552	Canola	cytosol	14.27	49.41
CDY64721	Canola	cytosol	13.25	47.95
CDY53470	Canola	mitochondrion	42.02	46.78
CDX90991	Canola	plastid	49.49	45.33
CDY68892	Canola	mitochondrion, plastid	42.47	45.24
CDX69524	Canola	plastid	48.92	44.4
CDY26423	Canola	plastid	48.81	44.3
CDX76768	Canola	mitochondrion	47.23	42.86
CDY56280	Canola	mitochondrion	47.23	42.81
CDY64710	Canola	cytosol	39.75	42.7
CDX84888	Canola	cytosol	39.52	42.2
CDX85551	Canola	plastid	30.35	40.98
CDX83052	Canola	mitochondrion	40.2	38.3
CDX68504	Canola	mitochondrion	40.2	38.25
CDY45800	Canola	plastid	39.64	38.0
CDY05878	Canola	mitochondrion	40.09	37.98
CDY38846	Canola	plastid	36.92	35.02
CDY32646	Canola	plastid	36.92	34.9
CDX71686	Canola	plastid	36.35	34.44

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:26.4.2.3	Gene3D:3.40.50.300	GO:A0A078DEU0	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	EnsemblPlants:CDX85823	ProteinID:CDX85823	ProteinID:CDX85823.1	InterPro:ClpA/B	InterPro:ClpA/B_CS1
InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00143592001	InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724
PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF146
SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI0004EEFD33	SEG:seg

Description

BnaC06g23110D

Coordinates

chrLK031843:-:55545..58999

Molecular Weight (calculated)

97765.3 Da

IEP (calculated)

5.571

GRAVY (calculated)

-0.339

Length

883 amino acids

Sequence
(BLAST)

001: MNPEKFTHKT SETIAAAHEL AVNAGHAQIT PLHLAGALIS DPAGIFPQAI STAGGGEAAA QSAERVINQA LKKLPSQAQS AQKSRGDTHL AVDQIIIGLL
101: EDSQIKDLLS EVGVGAGKVK AEVESASGDT NFQALKTYGR DLVEEAGKLD PVIGRDEEIR RVVRILSRRT KNNPVLIGEP GVGKTAVVEG LAQRIVKGDV
201: PNSLVDVRLV SLDMGALVAG AKYRGEFEER LKAVLKEVEE AEGKVILFID EIHLVLGAGK SEGSMDAANL FKPMLARGQL RCIGATTLEE YRKYVEKDAA
301: FERRFQQVYV AEPSVPDTIS ILRGLKERYE GHHGVRIQDR ALINAAQLSA RYITARHLPD KAIDLVDEAC ANVRVQLDSQ PEEIDNLERK RMQLEIELHA
401: LEREKDKASK ARLVEVRKEL DDLRDKLQPL TMKYKKEKER IDEIRRLKQK REELMFALQE AERRYDLARA ADLRYGAIQE VESAIAQLEG TSDENMMLTE
501: NVGPEHIAEV VSRWTGIPVT RLGQNEKDRL IGLADRLHKR VVGQDQAVSA VAEAILRSRA GLGRPQQPTG SFLFLGPTGV GKTELAKALA EQLFDDENLL
601: VRIDMSEYME QHSVSRLIGA PPGYVGHEEG GQLTEAVRRR PYCVILFDEV EKAHVAVFNT LLQVLDDGRL TDGQGRTVDF RNSVIIMTSN LGAEHLLSGL
701: TGKVTMQVAR ECVMQEVRKH FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVAVRLAE RGVALAVTDA ALDYILAESY DPVYGARPIR RWMEKKVVTE
801: LSKMVVREEI DENSTVYIDA GSGGSDLVYR VEKNGGLVNA TTGQKSDVLI HIANGPKKSD AAQAVKKMRI EEIEDDDEEM VED

Best Arabidopsis Sequence Match ( AT1G74310.1 )
(BLAST)

001: MNPEKFTHKT NETIATAHEL AVNAGHAQFT PLHLAGALIS DPTGIFPQAI SSAGGENAAQ SAERVINQAL KKLPSQSPPP DDIPASSSLI KVIRRAQAAQ
101: KSRGDTHLAV DQLIMGLLED SQIRDLLNEV GVATARVKSE VEKLRGKEGK KVESASGDTN FQALKTYGRD LVEQAGKLDP VIGRDEEIRR VVRILSRRTK
201: NNPVLIGEPG VGKTAVVEGL AQRIVKGDVP NSLTDVRLIS LDMGALVAGA KYRGEFEERL KSVLKEVEDA EGKVILFIDE IHLVLGAGKT EGSMDAANLF
301: KPMLARGQLR CIGATTLEEY RKYVEKDAAF ERRFQQVYVA EPSVPDTISI LRGLKEKYEG HHGVRIQDRA LINAAQLSAR YITGRHLPDK AIDLVDEACA
401: NVRVQLDSQP EEIDNLERKR MQLEIELHAL EREKDKASKA RLIEVRKELD DLRDKLQPLT MKYRKEKERI DEIRRLKQKR EELMFSLQEA ERRYDLARAA
501: DLRYGAIQEV ESAIAQLEGT SSEENVMLTE NVGPEHIAEV VSRWTGIPVT RLGQNEKERL IGLADRLHKR VVGQNQAVNA VSEAILRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDENLL VRIDMSEYME QHSVSRLIGA PPGYVGHEEG GQLTEAVRRR PYCVILFDEV EKAHVAVFNT LLQVLDDGRL
701: TDGQGRTVDF RNSVIIMTSN LGAEHLLAGL TGKVTMEVAR DCVMREVRKH FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVAVRLAE RGVALAVTDA
801: ALDYILAESY DPVYGARPIR RWMEKKVVTE LSKMVVREEI DENSTVYIDA GAGDLVYRVE SGGLVDASTG KKSDVLIHIA NGPKRSDAAQ AVKKMRIEEI
901: EDDDNEEMIE D

Arabidopsis Description

CLPB1Chaperone protein ClpB1 [Source:UniProtKB/Swiss-Prot;Acc:P42730]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.