CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96531	Canola	cytosol	99.33	99.33
CDX85823	Canola	nucleus	96.1	80.86
CDX68190	Canola	nucleus	87.62	79.88
AT1G74310.1	Thale cress	nucleus	95.42	77.83
KRH56831	Soybean	endoplasmic reticulum	88.29	72.01
VIT_17s0000g07190.t01	Wine grape	nucleus	88.02	71.79
Solyc03g115230.2.1	Tomato	plastid	85.6	69.81
PGSC0003DMT400063352	Potato	nucleus	85.33	69.52
Os05t0519700-01	Rice	nucleus	85.33	69.52
TraesCS3A01G274400.1	Wheat	cytosol	85.33	69.44
Zm00001d038806_P001	Maize	nucleus	85.2	69.41
EES19828	Sorghum	nucleus	85.2	69.33
TraesCS3D01G273600.1	Wheat	cytosol	84.93	69.11
TraesCS3B01G308100.1	Wheat	cytosol	84.79	69.0
TraesCS1D01G342100.1	Wheat	golgi	84.79	68.63
TraesCS1B01G352400.1	Wheat	cytosol, golgi	84.66	68.59
TraesCS1A01G340100.1	Wheat	nucleus	84.12	68.08
GSMUA_Achr1P13710_001	Banana	cytosol	77.93	68.04
KRH54672	Soybean	endoplasmic reticulum	68.78	67.86
EES01468	Sorghum	nucleus	82.91	67.32
GSMUA_Achr3P16240_001	Banana	cytosol	76.58	66.78
Solyc06g082560.1.1	Tomato	plastid	75.37	65.57
TraesCS4B01G393100.1	Wheat	cytosol	69.85	57.48
HORVU7Hr1G008950.1	Barley	cytosol, plastid	16.15	50.42
CDX85552	Canola	cytosol	16.82	49.02
CDY64721	Canola	cytosol	15.61	47.54
CDY53470	Canola	mitochondrion	44.82	41.99
CDY64710	Canola	cytosol	44.01	39.78
CDX90991	Canola	plastid	51.28	39.52
CDY68892	Canola	mitochondrion, plastid	44.01	39.45
CDX69524	Canola	plastid	51.28	39.16
CDY26423	Canola	plastid	51.28	39.16
CDX84888	Canola	cytosol	43.47	39.06
CDX76768	Canola	mitochondrion	48.99	37.41
CDY56280	Canola	mitochondrion	48.99	37.37
CDX83052	Canola	mitochondrion	44.55	35.71
CDX68504	Canola	mitochondrion	44.55	35.67
CDY05878	Canola	mitochondrion	44.41	35.41
CDY45800	Canola	plastid	43.47	35.07
CDX85551	Canola	plastid	30.28	34.4
CDY38846	Canola	plastid	39.3	31.36
CDY32646	Canola	plastid	39.3	31.26
CDX71686	Canola	plastid	38.76	30.9

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078CA80	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	EnsemblPlants:CDX73074	ProteinID:CDX73074	ProteinID:CDX73074.1	InterPro:ClpA/B	InterPro:ClpA/B_CS1
InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0008152	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00103526001	InterPro:IPR036628	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724
PFAM:PF10431	PRINTS:PR00300	ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF146
SMART:SM00382	SMART:SM01086	SUPFAM:SSF52540	SUPFAM:SSF81923	UniParc:UPI0004EEF015	SEG:seg

Description

BnaC06g35220D

Coordinates

chrLK031797:-:1951757..1955372

Molecular Weight (calculated)

81882.2 Da

IEP (calculated)

5.525

GRAVY (calculated)

-0.295

Length

743 amino acids

Sequence
(BLAST)

001: MNPEKFTHKT NETIAAAHEL AVNAGHAQIT PLHLAGALIS DPSGIFPQSI SSAGGENAAQ SAERVINQAL KKLPSQSPPP DDSRGDTHLA VDQLVIGLLE
101: DSQIKDLLKE VGVAAAKVKS EVENASGDTN FQALKTYGRD LVEEAGKLDP VIGRDEEIRR VVRILSRRTK NNPVLIGEPG VGKTAVVEGL AQRIVKGDVP
201: NSLTDVRLIS LDMGALVAGA KYRGEFEERL KAVLKEVEEA EGKVILFIDE IHLVLGAGKT EGSMDAANLF KPMLARGQLR CIGATTLEEY RKYVEKDAAF
301: ERRFQQVYVA EPSVVDTISI LRGLKEKYEG HHGVRIQDRA LINAAQLSAR YITGRHLPDK AIDLVDEACA NVRVQLDSQP EEIDNLERKR MQLEIELHAL
401: EREKDKASKA RLVEAILRSR AGLGRPQQPT GSFLFLGPTG VGKTELAKAL AEQLFDDENL LVRIDMSEYM EQHSVSRLIG APPGYVGHEE GGQLTEAVRR
501: RPYCVILFDE VEKAHVAVFN TLLQVLDDGR LTDGQGRTVD FRNSVIIMTS NLGAEHLLSG LTGKVSMQVA RECVMQEVRR HFRPELLNRL DEIVVFDPLS
601: HEQLRKVARL QMKEVAVRLA ERGVALAVTD AALDYILAES YDPVYGARPI RRWMEKKVVT ELSKMVVREE IDENSTVYID AGSGGSDLVY RVEKNGGLVN
701: ATTGKKSDVL IHIANGPKKS DAAQAVKKMR IEEIDDDEEM VED

Best Arabidopsis Sequence Match ( AT1G74310.1 )
(BLAST)

001: MNPEKFTHKT NETIATAHEL AVNAGHAQFT PLHLAGALIS DPTGIFPQAI SSAGGENAAQ SAERVINQAL KKLPSQSPPP DDIPASSSLI KVIRRAQAAQ
101: KSRGDTHLAV DQLIMGLLED SQIRDLLNEV GVATARVKSE VEKLRGKEGK KVESASGDTN FQALKTYGRD LVEQAGKLDP VIGRDEEIRR VVRILSRRTK
201: NNPVLIGEPG VGKTAVVEGL AQRIVKGDVP NSLTDVRLIS LDMGALVAGA KYRGEFEERL KSVLKEVEDA EGKVILFIDE IHLVLGAGKT EGSMDAANLF
301: KPMLARGQLR CIGATTLEEY RKYVEKDAAF ERRFQQVYVA EPSVPDTISI LRGLKEKYEG HHGVRIQDRA LINAAQLSAR YITGRHLPDK AIDLVDEACA
401: NVRVQLDSQP EEIDNLERKR MQLEIELHAL EREKDKASKA RLIEVRKELD DLRDKLQPLT MKYRKEKERI DEIRRLKQKR EELMFSLQEA ERRYDLARAA
501: DLRYGAIQEV ESAIAQLEGT SSEENVMLTE NVGPEHIAEV VSRWTGIPVT RLGQNEKERL IGLADRLHKR VVGQNQAVNA VSEAILRSRA GLGRPQQPTG
601: SFLFLGPTGV GKTELAKALA EQLFDDENLL VRIDMSEYME QHSVSRLIGA PPGYVGHEEG GQLTEAVRRR PYCVILFDEV EKAHVAVFNT LLQVLDDGRL
701: TDGQGRTVDF RNSVIIMTSN LGAEHLLAGL TGKVTMEVAR DCVMREVRKH FRPELLNRLD EIVVFDPLSH DQLRKVARLQ MKDVAVRLAE RGVALAVTDA
801: ALDYILAESY DPVYGARPIR RWMEKKVVTE LSKMVVREEI DENSTVYIDA GAGDLVYRVE SGGLVDASTG KKSDVLIHIA NGPKRSDAAQ AVKKMRIEEI
901: EDDDNEEMIE D

Arabidopsis Description

CLPB1Chaperone protein ClpB1 [Source:UniProtKB/Swiss-Prot;Acc:P42730]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.