CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY39879

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G15450.1	CDY39879	AT2G25000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023518.1-P	Field mustard	plastid	99.07	99.17
CDX85551	Canola	plastid	67.01	98.78
CDX85552	Canola	cytosol	26.04	98.43
CDX69524	Canola	plastid	95.75	94.86
AT5G15450.1	Thale cress	plastid	95.23	94.83
CDY26423	Canola	plastid	95.44	94.55
VIT_14s0108g01500.t01	Wine grape	plastid	84.44	83.4
KRH01254	Soybean	nucleus, plastid	84.23	83.37
KRH44979	Soybean	nucleus, plastid	83.92	83.06
PGSC0003DMT400003652	Potato	cytosol, plastid	83.4	82.12
Solyc02g088610.2.1	Tomato	plastid	83.4	82.04
KRH18417	Soybean	nucleus	83.09	81.9
GSMUA_Achr6P16670_001	Banana	plastid	79.56	81.86
KRG93616	Soybean	nucleus	82.99	81.8
Os03t0426900-01	Rice	plastid	79.98	78.83
Zm00001d029557_P001	Maize	plastid	78.94	77.81
Zm00001d047302_P002	Maize	plastid	78.53	77.72
TraesCSU01G131300.1	Wheat	plastid	78.11	77.55
TraesCS4B01G380800.1	Wheat	plastid	78.11	77.23
EER94678	Sorghum	plastid	78.63	77.11
TraesCS5A01G547300.1	Wheat	golgi, plastid	77.9	77.1
HORVU4Hr1G090440.2	Barley	plastid	78.01	71.08
CDX76768	Canola	mitochondrion	66.81	66.19
CDY56280	Canola	mitochondrion	66.7	66.02
CDY64721	Canola	cytosol	15.35	60.66
CDY53470	Canola	mitochondrion	49.38	60.03
CDY68892	Canola	mitochondrion, plastid	50.83	59.11
CDX73074	Canola	cytosol	39.52	51.28
CDX96531	Canola	cytosol	39.42	51.14
CDX68190	Canola	nucleus	42.22	49.94
CDX85823	Canola	nucleus	45.33	49.49
CDY64710	Canola	cytosol	38.9	45.62
CDX84888	Canola	cytosol	39.0	45.47
CDY45800	Canola	plastid	39.83	41.69
CDX83052	Canola	mitochondrion	39.63	41.21
CDY05878	Canola	mitochondrion	39.83	41.2
CDX68504	Canola	mitochondrion	39.63	41.16
CDY38846	Canola	plastid	36.41	37.7
CDX71686	Canola	plastid	36.41	37.66
CDY32646	Canola	plastid	36.31	37.47

Protein Annotations

Gene3D:1.10.1780.10	Gene3D:1.10.8.60	MapMan:26.4.2.4	Gene3D:3.40.50.300	GO:A0A078DP19	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_core	EnsemblPlants:CDX90991	ProteinID:CDX90991	ProteinID:CDX90991.1	InterPro:Chaperonin_ClpB	InterPro:ClpA/B
InterPro:ClpA/B_CS1	InterPro:ClpA/B_CS2	InterPro:Clp_ATPase_C	InterPro:Clp_N	InterPro:Clp_N_dom_sf	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009408
GO:GO:0009628	GO:GO:0009987	GO:GO:0019538	GO:GO:0042026	EnsemblPlantsGene:GSBRNA2T00151751001	InterPro:IPR036628
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF02861	PFAM:PF07724	PFAM:PF10431	PRINTS:PR00300
ScanProsite:PS00870	ScanProsite:PS00871	PANTHER:PTHR11638	PANTHER:PTHR11638:SF144	SMART:SM00382	SMART:SM01086
SUPFAM:SSF52540	SUPFAM:SSF81923	TIGRFAMs:TIGR03346	UniParc:UPI0004EE5230	SEG:seg	:

Description

BnaC02g06060D

Coordinates

chrLK031865:+:186911..191501

Molecular Weight (calculated)

108306.0 Da

IEP (calculated)

5.839

GRAVY (calculated)

-0.432

Length

964 amino acids

Sequence
(BLAST)

001: MATTATSAFS GVIGVGSESR KVSTFSHLQP SVAFPAKPNS FKSLKLKHSA RLTRRLEHRS FVVRCEASSN GRLTQQEFTE MAWQSIVSSP DVAKENKQQI
101: VETEHLMKAL LEQKNGLARR IFSKIGVDNT KVLEATEKFI QRQPKVYGES AGSMLGRDLE GLFERARKYK KDLGDSYVSV EHLVLAFAQD KRFGKQLFKD
201: FQISEKSLKA AIESIRGKQS VIDQDPEGKY EALEKYGKDL TAMAREGKLD PVIGRDDEIR RCIQILSRRT KNNPVLIGEP GVGKTAISEG LAQRIVQGDV
301: PQALMNRKLI SLDMGALIAG AKYRGEFEDR LKAVLKEVTD SEGQIILFID EIHTVVGAGA TNGAMDAGNL LKPMLGRGEL RCIGATTLDE YRKYIEKDPA
401: LERRFQQVYV DQPTVEDTVS ILRGLRERYE LHHGVRISDS ALVEAAILSD RYISGRFLPD KAIDLVDEAA AKLKMEITSK PTALDELDRA VIKLEMERLS
501: LTNDTDKASR ERLSRIETEL LSLKEKQAEL TQQWEHERSV MSRLQSIKEE IDRVNLEIQQ AEREYDLNRA AELKYGSLNS LQRQLNEAEK ELDEYLSSGE
601: SMFREEVLGS DIAEIVSKWT GIPVSKLQQS ERDKLLHLEE ELHKRVVGQN PAVTAVAEAI QRSRAGLSDP GRPIASFMFM GPTGVGKTEL AKALASYLFN
701: TEEALVRIDM SEYMEKHAVS RLIGAPPGYV GYEEGGQLTE TVRRRPYSVI LFDEIEKAHG DVFNVFLQIL DDGRVTDSQG RTVSFTNTVI IMTSNVGSQF
801: ILNNTDDDAK ELAYETIKQR VMDAARSIFR PEFINRVDEY IVFQPLDRDQ INIIVRLQLA RVQKRIADRK MKIEITDAAV DLLGSLGYDP NYGARPVKRV
901: IQQNIENELA KGILRGDFKE EDGILIDTEV TAFSNGQLPQ QKLIFKKIES ETADAGKEEE AFSK

Best Arabidopsis Sequence Match ( AT5G15450.1 )
(BLAST)

001: MATATTTATA AFSGVVSVGT ETRRIYSFSH LQPSAAFPAK PSSFKSLKLK QSARLTRRLD HRPFVVRCEA SSSNGRLTQQ EFTEMAWQSI VSSPDVAKEN
101: KQQIVETEHL MKALLEQKNG LARRIFSKIG VDNTKVLEAT EKFIQRQPKV YGDAAGSMLG RDLEALFQRA RQFKKDLKDS YVSVEHLVLA FADDKRFGKQ
201: LFKDFQISER SLKSAIESIR GKQSVIDQDP EGKYEALEKY GKDLTAMARE GKLDPVIGRD DEIRRCIQIL SRRTKNNPVL IGEPGVGKTA ISEGLAQRIV
301: QGDVPQALMN RKLISLDMGA LIAGAKYRGE FEDRLKAVLK EVTDSEGQII LFIDEIHTVV GAGATNGAMD AGNLLKPMLG RGELRCIGAT TLDEYRKYIE
401: KDPALERRFQ QVYVDQPTVE DTISILRGLR ERYELHHGVR ISDSALVEAA ILSDRYISGR FLPDKAIDLV DEAAAKLKME ITSKPTALDE LDRSVIKLEM
501: ERLSLTNDTD KASRERLNRI ETELVLLKEK QAELTEQWEH ERSVMSRLQS IKEEIDRVNL EIQQAEREYD LNRAAELKYG SLNSLQRQLN EAEKELNEYL
601: SSGKSMFREE VLGSDIAEIV SKWTGIPVSK LQQSERDKLL HLEEELHKRV VGQNPAVTAV AEAIQRSRAG LSDPGRPIAS FMFMGPTGVG KTELAKALAS
701: YMFNTEEALV RIDMSEYMEK HAVSRLIGAP PGYVGYEEGG QLTETVRRRP YSVILFDEIE KAHGDVFNVF LQILDDGRVT DSQGRTVSFT NTVIIMTSNV
801: GSQFILNNTD DDANELSYET IKERVMNAAR SIFRPEFMNR VDEYIVFKPL DREQINRIVR LQLARVQKRI ADRKMKINIT DAAVDLLGSL GYDPNYGARP
901: VKRVIQQNIE NELAKGILRG DFKEEDGILI DTEVTAFSNG QLPQQKLTFK KIESETADAE QEEAAFSK

Arabidopsis Description

CLPB3Chaperone protein ClpB3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF37]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.