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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:nucleus, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:nucleus
 plastid: 16481623
plastid: 16595579
plastid: 18419817
golgi: 23128297
msms PMID: 18419817 doi
FM Dupont
Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.
msms PMID: 16595579 doi
Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman
Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.
msms PMID: 16481623 doi
Y Balmer, WH Vensel, N Cai, W Manieri, P Schürmann, WJ Hurkman, BB Buchanan
Department of Plant and Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.
msms, gfp PMID: 23128297 doi
M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS5A01G225500.1
TraesCS5A01G225600.1
TraesCS5B01G224000.1
TraesCS5B01G224100.1
TraesCS5D01G232700.1
TraesCS5D01G232800.1
TraesCS5D01G232900.1
TraesCS6A01G146900.1
TraesCS6B01G175100.2
TraesCS6D01G136200.1
TraesCS7A01G508700.1
TraesCS7A01G508800.1
TraesCS7A01G509000.1
TraesCS7B01G418400.1
TraesCS7B01G418500.2
TraesCS7B01G418600.1
TraesCS7B01G419400.1
TraesCS7D01G497300.1
TraesCS7D01G497400.1
TraesCS7D01G497700.1
TraesCS7D01G497800.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G15450.1 TraesCS5A01G225500.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS5A01G225600.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS5B01G224000.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS5B01G224100.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS5D01G232700.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS5D01G232800.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS5D01G232900.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS6A01G146900.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS6B01G175100.2 AT2G25000.1 21798944
AT5G15450.1 TraesCS6D01G136200.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS7A01G508700.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS7A01G508800.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS7A01G509000.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS7B01G418400.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS7B01G418500.2 AT2G25000.1 21798944
AT5G15450.1 TraesCS7B01G418600.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS7B01G419400.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS7D01G497300.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS7D01G497400.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS7D01G497700.1 AT2G25000.1 21798944
AT5G15450.1 TraesCS7D01G497800.1 AT2G25000.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4B01G380800.1 Wheat plastid 99.28 98.87
TraesCS5A01G547300.1 Wheat golgi, plastid 99.07 98.77
Os03t0426900-01 Rice plastid 91.66 91.0
Zm00001d047302_P002 Maize plastid 90.53 90.25
Zm00001d029557_P001 Maize plastid 90.73 90.08
HORVU4Hr1G090440.2 Barley plastid 98.15 90.08
EER94678 Sorghum plastid 90.63 89.52
GSMUA_Achr6P16670_001 Banana plastid 77.55 80.36
VIT_14s0108g01500.t01 Wine grape plastid 79.51 79.1
KRH18417 Soybean nucleus 79.2 78.63
Bra023518.1-P Field mustard plastid 77.96 78.61
AT5G15450.1 Thale cress plastid 78.27 78.51
KRG93616 Soybean nucleus 78.99 78.43
KRH01254 Soybean nucleus, plastid 78.37 78.13
KRH44979 Soybean nucleus, plastid 78.37 78.13
CDX90991 Canola plastid 77.55 78.11
PGSC0003DMT400003652 Potato cytosol, plastid 78.58 77.94
CDX85551 Canola plastid 52.32 77.68
Solyc02g088610.2.1 Tomato plastid 78.37 77.65
Bra008698.1-P Field mustard plastid 77.75 77.6
CDY26423 Canola plastid 77.75 77.6
CDX69524 Canola plastid 77.75 77.6
CDX85552 Canola cytosol 20.19 76.86
TraesCSU01G102400.1 Wheat endoplasmic reticulum 29.76 46.46
TraesCSU01G102300.1 Wheat endoplasmic reticulum 29.76 46.46
TraesCSU01G211500.1 Wheat cytosol 29.25 44.17
TraesCSU01G064000.1 Wheat plastid 29.25 44.17
Protein Annotations
Gene3D:1.10.1780.10Gene3D:1.10.8.60MapMan:26.4.2.4Gene3D:3.40.50.300InterPro:AAA+_ATPaseInterPro:ATPase_AAA_core
InterPro:Chaperonin_ClpBInterPro:ClpA/BInterPro:ClpA/B_CS1InterPro:ClpA/B_CS2InterPro:Clp_ATPase_CInterPro:Clp_N
InterPro:Clp_N_dom_sfncoils:CoilGO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006950GO:GO:0008150
GO:GO:0008152GO:GO:0009408GO:GO:0009507GO:GO:0009532GO:GO:0009536GO:GO:0009570
GO:GO:0009628GO:GO:0009658GO:GO:0009987GO:GO:0016043GO:GO:0019538GO:GO:0042026
InterPro:IPR036628InterPro:P-loop_NTPasePFAM:PF00004PFAM:PF02861PFAM:PF07724PFAM:PF10431
PRINTS:PR00300ScanProsite:PS00870ScanProsite:PS00871PANTHER:PTHR11638PANTHER:PTHR11638:SF144SMART:SM00382
SMART:SM01086SUPFAM:SSF52540SUPFAM:SSF81923TIGRFAMs:TIGR03346EnsemblPlantsGene:TraesCSU01G131300EnsemblPlants:TraesCSU01G131300.1
TIGR:cd00009SEG:seg::::
Description
No Description!
Coordinates
chrUn:+:110792543..110798430
Molecular Weight (calculated)
108384.0 Da
IEP (calculated)
7.088
GRAVY (calculated)
-0.438
Length
971 amino acids
Sequence
(BLAST)
001: MATALAADLH ISSYPAAAPA PAVAAAAWGS SRRAAGPSSG RVALRAARGR GRLAPVVGTP RTALSVRCNA SSRDGRITQQ EFTEMAWQSI VLAPEVAKES
101: KHQIVETEHL MKSLLEQRNG LARRIFSKAG VDNTRLLDAT EKYIQRQPKV LGEDPGSMLG RDLEALIQRA RNFKKEYGDS FVSVEHIVLG FADDKRFGRQ
201: LFKDFQITVE SLKTAIESIR GKQNVIDQDP EGKYEALDKY GKDLTAMARQ GKLDPVIGRD DEIRRCIQIL SRRTKNNPVL IGEPGVGKTA IAEGLAQRIV
301: QGDVPQALTN RRLITLDMGA LIAGAKYRGE FEDRLKAVLK EVTDSDGQVV LFIDEIHTVV GAGATSGAMD AGNLLKPMLG RGELRCIGAT TLDEYRKYIE
401: KDPALERRFQ QVYVDQPTVE DTVSILRGLR ERYELHHGVR ISDSALVAAA LLSDRYISGR FLPDKAIDLV DESAAKLKME ITSKPTALDE IDRSVLKLEM
501: ERLSLTNDTD KASRDRLSRI EAELSLLKER QKGLTEQWER EKSVMTKIQS IKEEIDRLNV EIQQAEREYD LNRAAELKYG SLNALQRDLQ KTEDELNEYQ
601: SSGKSMLREE VTQDDIAEIV SRWTGIPVSK LKQSDREKLL YLEDELHKRV VGQDPAVKAV AEAIQRSRAG LSDPNRPIAS FMFMGPTGVG KTELAKALAS
701: FMFNTEDAVV RIDMSEYMEK HSVSRLIGAP PGYVGYEEGG QLTEAVRRRP YSVVLFDEIE KAHSDVFNVF LQILDDGRVT DSQGRKVSFT NSIIIMTSNV
801: GSQYILNMDE EGGATDSAYE SMKKRVMDAA RSVFRPEFMN RVDEYIVFKP LERKQINSIV KLQLARVQKR IADRKIKLDV SPAAIEFLGS LGYDPNYGAR
901: PVKRVLQQYV ENELAKGILR GEFKDEDSIS VDTQVTVPSN GQLPQQKLVF RKTNEESKPA AAQDEKFLPT V
Best Arabidopsis Sequence Match ( AT5G15450.1 )
(BLAST)
001: MATATTTATA AFSGVVSVGT ETRRIYSFSH LQPSAAFPAK PSSFKSLKLK QSARLTRRLD HRPFVVRCEA SSSNGRLTQQ EFTEMAWQSI VSSPDVAKEN
101: KQQIVETEHL MKALLEQKNG LARRIFSKIG VDNTKVLEAT EKFIQRQPKV YGDAAGSMLG RDLEALFQRA RQFKKDLKDS YVSVEHLVLA FADDKRFGKQ
201: LFKDFQISER SLKSAIESIR GKQSVIDQDP EGKYEALEKY GKDLTAMARE GKLDPVIGRD DEIRRCIQIL SRRTKNNPVL IGEPGVGKTA ISEGLAQRIV
301: QGDVPQALMN RKLISLDMGA LIAGAKYRGE FEDRLKAVLK EVTDSEGQII LFIDEIHTVV GAGATNGAMD AGNLLKPMLG RGELRCIGAT TLDEYRKYIE
401: KDPALERRFQ QVYVDQPTVE DTISILRGLR ERYELHHGVR ISDSALVEAA ILSDRYISGR FLPDKAIDLV DEAAAKLKME ITSKPTALDE LDRSVIKLEM
501: ERLSLTNDTD KASRERLNRI ETELVLLKEK QAELTEQWEH ERSVMSRLQS IKEEIDRVNL EIQQAEREYD LNRAAELKYG SLNSLQRQLN EAEKELNEYL
601: SSGKSMFREE VLGSDIAEIV SKWTGIPVSK LQQSERDKLL HLEEELHKRV VGQNPAVTAV AEAIQRSRAG LSDPGRPIAS FMFMGPTGVG KTELAKALAS
701: YMFNTEEALV RIDMSEYMEK HAVSRLIGAP PGYVGYEEGG QLTETVRRRP YSVILFDEIE KAHGDVFNVF LQILDDGRVT DSQGRTVSFT NTVIIMTSNV
801: GSQFILNNTD DDANELSYET IKERVMNAAR SIFRPEFMNR VDEYIVFKPL DREQINRIVR LQLARVQKRI ADRKMKINIT DAAVDLLGSL GYDPNYGARP
901: VKRVIQQNIE NELAKGILRG DFKEEDGILI DTEVTAFSNG QLPQQKLTFK KIESETADAE QEEAAFSK
Arabidopsis Description
CLPB3Chaperone protein ClpB3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LF37]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.