Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G136200.1 | Wheat | nucleus | 96.29 | 96.84 |
| TraesCS6B01G175100.2 | Wheat | nucleus | 95.14 | 93.8 |
| HORVU6Hr1G028790.1 | Barley | nucleus | 93.14 | 92.35 |
| Os02t0181300-01 | Rice | nucleus | 70.86 | 71.26 |
| Zm00001d053746_P001 | Maize | nucleus | 63.71 | 69.47 |
| Zm00001d015515_P001 | Maize | nucleus | 68.86 | 69.45 |
| EES04642 | Sorghum | nucleus | 72.0 | 69.23 |
| TraesCS7A01G508800.1 | Wheat | nucleus | 54.29 | 58.1 |
| TraesCS7A01G508700.1 | Wheat | nucleus | 52.57 | 56.79 |
| TraesCS7A01G509000.1 | Wheat | nucleus | 52.29 | 52.59 |
| GSMUA_Achr7P05200_001 | Banana | nucleus | 38.0 | 47.5 |
| Bra019123.1-P | Field mustard | nucleus | 26.29 | 47.42 |
| PGSC0003DMT400073710 | Potato | nucleus | 28.57 | 46.08 |
| Solyc12g042590.1.1 | Tomato | nucleus | 27.71 | 44.91 |
| Solyc08g067340.2.1 | Tomato | nucleus | 31.71 | 43.87 |
| PGSC0003DMT400019061 | Potato | nucleus | 31.43 | 43.48 |
| KRH61669 | Soybean | nucleus | 27.14 | 43.18 |
| Solyc08g067360.2.1 | Tomato | nucleus | 31.71 | 43.02 |
| PGSC0003DMT400019058 | Potato | nucleus | 32.0 | 42.91 |
| CDX72327 | Canola | nucleus | 34.57 | 42.46 |
| CDX75196 | Canola | nucleus | 34.0 | 42.05 |
| KRH15674 | Soybean | nucleus | 33.71 | 41.84 |
| VIT_09s0018g00240.t01 | Wine grape | nucleus | 36.86 | 41.48 |
| AT2G25000.1 | Thale cress | nucleus | 31.71 | 40.96 |
| KRH47344 | Soybean | nucleus | 35.71 | 40.19 |
| KRH23643 | Soybean | nucleus | 35.43 | 40.13 |
| KRH44560 | Soybean | nucleus | 35.43 | 39.62 |
| Bra010220.1-P | Field mustard | nucleus | 34.86 | 39.61 |
| CDY39879 | Canola | nucleus | 34.57 | 39.41 |
| Bra008435.1-P | Field mustard | nucleus | 32.57 | 39.31 |
| CDY22299 | Canola | nucleus | 32.57 | 39.31 |
| CDX68787 | Canola | nucleus | 35.71 | 39.19 |
| Bra011299.1-P | Field mustard | nucleus | 35.43 | 39.12 |
| CDY67287 | Canola | nucleus | 32.29 | 38.97 |
| AT1G80840.1 | Thale cress | nucleus | 33.43 | 38.74 |
| CDX67971 | Canola | nucleus | 32.86 | 38.72 |
| Bra003588.1-P | Field mustard | nucleus | 32.86 | 38.72 |
| Bra035148.1-P | Field mustard | nucleus | 33.14 | 38.67 |
| CDX87347 | Canola | nucleus | 33.14 | 38.67 |
| CDX88573 | Canola | nucleus | 33.14 | 38.54 |
| AT4G31800.1 | Thale cress | nucleus | 34.0 | 38.39 |
| KRH05350 | Soybean | nucleus | 34.0 | 38.14 |
| CDX79347 | Canola | nucleus | 32.29 | 37.92 |
| VIT_04s0008g05760.t01 | Wine grape | nucleus | 34.29 | 37.85 |
| KRH09652 | Soybean | nucleus | 34.86 | 36.97 |
| TraesCS5A01G225500.1 | Wheat | nucleus | 28.0 | 36.16 |
| Solyc06g068460.2.1 | Tomato | nucleus | 36.57 | 35.56 |
| PGSC0003DMT400073396 | Potato | nucleus | 36.29 | 35.28 |
| Solyc03g116890.2.1 | Tomato | nucleus | 34.57 | 34.57 |
| CDY70096 | Canola | nucleus | 33.71 | 34.2 |
| Bra023983.1-P | Field mustard | nucleus | 33.71 | 34.2 |
| KRH52329 | Soybean | nucleus | 29.71 | 33.66 |
| PGSC0003DMT400051047 | Potato | nucleus | 34.0 | 33.52 |
| TraesCS5A01G225600.1 | Wheat | nucleus | 31.43 | 33.23 |
| TraesCS3A01G167200.1 | Wheat | nucleus | 25.43 | 15.48 |
| TraesCS7A01G096300.1 | Wheat | nucleus | 25.14 | 14.57 |
| TraesCS7A01G096500.1 | Wheat | nucleus | 25.43 | 14.57 |
| TraesCS4A01G396400.2 | Wheat | nucleus | 24.86 | 14.48 |
| TraesCS4A01G396300.1 | Wheat | nucleus | 23.43 | 14.02 |
| TraesCS4A01G396200.1 | Wheat | nucleus | 23.14 | 13.39 |
| TraesCS6A01G326500.2 | Wheat | nucleus | 21.14 | 13.38 |
| TraesCS7A01G096200.1 | Wheat | nucleus | 6.86 | 9.92 |
Protein Annotations
| MapMan:15.5.22 | Gene3D:2.20.25.80 | ncoils:Coil | GO:GO:0002237 | GO:GO:0002238 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003682 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006950 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009409 |
| GO:GO:0009414 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009611 | GO:GO:0009617 | GO:GO:0009620 |
| GO:GO:0009623 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009737 |
| GO:GO:0009739 | GO:GO:0009751 | GO:GO:0009753 | GO:GO:0009938 | GO:GO:0009987 | GO:GO:0010200 |
| GO:GO:0031347 | GO:GO:0043565 | GO:GO:0045892 | GO:GO:1990841 | InterPro:IPR003657 | InterPro:IPR036576 |
| PFAM:PF03106 | PFscan:PS50811 | PANTHER:PTHR31429 | PANTHER:PTHR31429:SF9 | SMART:SM00774 | SUPFAM:SSF118290 |
| EnsemblPlantsGene:TraesCS6A01G146900 | EnsemblPlants:TraesCS6A01G146900.1 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : |
Description
No Description!
Coordinates
chr6A:-:126345205..126346723
Molecular Weight (calculated)
38017.7 Da
IEP (calculated)
8.371
GRAVY (calculated)
-0.746
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPWVSSQPS LSLDLHVGLP PMGHHQAAPM VALAKPKVLV EENFMQLKKD PEVAVLESEL QRVSEENRRL GEMLREVASK YEALQGQFTD MVTAGAHAGG
101: NNSHYNNQPS SASEGGSVSP SRKRKSEESL GTPPRPSQHQ QQHYAGGLAY AAAPDQAECT SGEPCKRIRE ECKPVVSKRY VHADPSDLSL VVKDGYQWRK
201: YGQKVTKDNP CPRAYFRCSF APGCPVKKKV QRSAEDKTIL VATYEGEHNH TQPPPSQPQQ QNDGSGAGKN AGKPPQAPTA TPHHPQQQHK QEAAAAAVSG
301: ESAVAASELI RRNLAEQMAM TLTRDPSFKA ALVSALSGRI LELSPTRDIN
101: NNSHYNNQPS SASEGGSVSP SRKRKSEESL GTPPRPSQHQ QQHYAGGLAY AAAPDQAECT SGEPCKRIRE ECKPVVSKRY VHADPSDLSL VVKDGYQWRK
201: YGQKVTKDNP CPRAYFRCSF APGCPVKKKV QRSAEDKTIL VATYEGEHNH TQPPPSQPQQ QNDGSGAGKN AGKPPQAPTA TPHHPQQQHK QEAAAAAVSG
301: ESAVAASELI RRNLAEQMAM TLTRDPSFKA ALVSALSGRI LELSPTRDIN
001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
Arabidopsis Description
WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.