Factsheet for VIT_04s0008g05760.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g04360.t01
VIT_04s0008g05760.t01
VIT_04s0008g06770.t01
VIT_07s0005g01100.t01
VIT_09s0018g00240.t01
VIT_11s0037g00490.t01
VIT_14s0066g00150.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25000.1	VIT_09s0018g00240.t01	AT1G80840.1	16603654
AT2G25000.1	VIT_04s0008g05760.t01	AT2G25000.1	16603654
AT2G25000.1	VIT_04s0008g05760.t01	AT2G25000.1	21798944
AT2G25000.1	VIT_14s0066g00150.t01	AT3G27420.1	21798944
AT2G25000.1	VIT_07s0005g01100.t01	AT4G02150.1	21798944
AT2G25000.1	VIT_04s0008g05760.t01	AT4G31800.1	16603654
AT2G25000.1	VIT_04s0008g05760.t01	AT4G31800.1	21798944
AT2G25000.1	VIT_04s0008g06770.t01	AT5G57870.1	21798944
AT2G25000.1	VIT_11s0037g00490.t01	AT5G57870.1	21798944
AT4G31800.1	VIT_03s0038g04360.t01	AT1G71230.1	21798944
AT4G31800.1	VIT_09s0018g00240.t01	AT1G80840.1	16603654
AT4G31800.1	VIT_09s0018g00240.t01	AT1G80840.1	18776063
AT4G31800.1	VIT_09s0018g00240.t01	AT1G80840.1	21798944
AT4G31800.1	VIT_04s0008g05760.t01	AT2G25000.1	16603654
AT4G31800.1	VIT_04s0008g05760.t01	AT4G31800.1	16603654
AT4G31800.1	VIT_04s0008g05760.t01	AT4G31800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P19340_001	Banana	nucleus	35.65	58.85
VIT_09s0018g00240.t01	Wine grape	nucleus	54.57	55.63
Bra019123.1-P	Field mustard	nucleus	32.49	53.09
KRH15674	Soybean	nucleus	46.69	52.48
PGSC0003DMT400019061	Potato	nucleus	41.01	51.38
PGSC0003DMT400019058	Potato	nucleus	42.27	51.34
Solyc08g067340.2.1	Tomato	nucleus	40.69	50.99
KRH61669	Soybean	nucleus	35.02	50.45
CDX72327	Canola	nucleus	45.11	50.18
Solyc08g067360.2.1	Tomato	nucleus	40.38	49.61
GSMUA_Achr10P...	Banana	nucleus	36.28	49.57
GSMUA_Achr2P05100_001	Banana	nucleus	29.65	49.47
GSMUA_Achr5P16460_001	Banana	nucleus	35.02	47.23
KRH05350	Soybean	nucleus	46.37	47.12
AT2G25000.1	Thale cress	nucleus	40.06	46.86
AT4G31800.1	Thale cress	nucleus	45.74	46.77
CDX75196	Canola	nucleus	41.64	46.64
Bra010220.1-P	Field mustard	nucleus	43.85	45.13
CDY39879	Canola	nucleus	43.53	44.95
GSMUA_Achr11P...	Banana	nucleus	34.7	44.9
GSMUA_Achr7P16090_001	Banana	endoplasmic reticulum, nucleus, plastid	31.23	44.39
GSMUA_Achr3P13440_001	Banana	nucleus	38.49	44.36
CDX68787	Canola	nucleus	43.85	43.57
Bra011299.1-P	Field mustard	nucleus	43.53	43.53
GSMUA_Achr7P05200_001	Banana	nucleus	37.54	42.5
GSMUA_Achr10P...	Banana	nucleus	38.49	42.36
HORVU5Hr1G065380.2	Barley	nucleus	23.03	41.95
Bra023983.1-P	Field mustard	nucleus	44.8	41.16
CDY70096	Canola	nucleus	44.8	41.16
GSMUA_Achr4P01930_001	Banana	extracellular, golgi	35.96	39.45
KRH52329	Soybean	nucleus	38.17	39.16
VIT_04s0008g05750.t01	Wine grape	nucleus	31.86	38.7
Zm00001d053746_P001	Maize	nucleus	38.49	38.01
Zm00001d020492_P001	Maize	nucleus	35.02	36.76
TraesCS7B01G418500.2	Wheat	nucleus	37.85	36.47
Os09t0417600-02	Rice	nucleus	37.54	36.39
TraesCS7D01G497400.1	Wheat	nucleus	37.54	36.39
TraesCS7A01G508800.1	Wheat	nucleus	37.22	36.09
HORVU7Hr1G113830.1	Barley	nucleus	35.96	35.74
TraesCS7B01G418400.1	Wheat	nucleus	36.59	35.58
EES04642	Sorghum	nucleus	40.69	35.44
Os06t0649000-01	Rice	nucleus	37.54	35.31
Zm00001d015515_P001	Maize	nucleus	38.49	35.16
TraesCS7B01G419400.1	Wheat	nucleus	35.33	34.78
Os02t0181300-01	Rice	nucleus	38.17	34.77
TraesCS5B01G224000.1	Wheat	nucleus	36.28	34.74
TraesCS7D01G497800.1	Wheat	nucleus	35.65	34.66
TraesCS7D01G497700.1	Wheat	nucleus	35.65	34.45
GSMUA_Achr1P10080_001	Banana	nucleus	36.28	34.33
TraesCS6A01G146900.1	Wheat	nucleus	37.85	34.29
TraesCS7A01G508700.1	Wheat	nucleus	35.02	34.26
TraesCS6D01G136200.1	Wheat	nucleus	37.54	34.2
Zm00001d046805_P001	Maize	nucleus	37.85	34.19
EER98905	Sorghum	nucleus, plastid	35.02	33.95
EER90124	Sorghum	nucleus	36.59	33.92
TraesCS5D01G232800.1	Wheat	nucleus	35.33	33.84
Zm00001d036726_P001	Maize	nucleus	36.59	33.72
HORVU6Hr1G028790.1	Barley	nucleus	37.54	33.71
EER88729	Sorghum	nucleus	36.59	33.33
TraesCS5A01G225600.1	Wheat	nucleus	34.7	33.23
TraesCS5D01G232700.1	Wheat	nucleus	28.39	33.21
TraesCS7A01G509000.1	Wheat	nucleus	35.65	32.47
TraesCS5B01G224100.1	Wheat	nucleus	33.75	32.42
TraesCS6B01G175100.2	Wheat	nucleus	36.28	32.39
TraesCS7B01G418600.1	Wheat	nucleus	29.34	32.18
TraesCS5A01G225500.1	Wheat	nucleus	27.44	32.1
Zm00001d020495_P001	Maize	nucleus	26.81	31.95
TraesCS7D01G497300.1	Wheat	plastid	36.91	31.45
KXG35639	Sorghum	nucleus	29.02	31.19
TraesCS5D01G232900.1	Wheat	nucleus	35.33	30.19
Os09t0417800-01	Rice	nucleus	29.65	29.56
HORVU7Hr1G113850.4	Barley	nucleus, plastid	37.54	29.31
HORVU5Hr1G065420.15	Barley	nucleus	35.65	28.9
Zm00001d005749_P001	Maize	nucleus	31.86	28.77
VIT_10s0116g01200.t01	Wine grape	nucleus	31.86	18.88
VIT_07s0005g02570.t01	Wine grape	nucleus	29.65	18.58
VIT_12s0059g00880.t01	Wine grape	nucleus	33.12	17.71
VIT_19s0090g00840.t01	Wine grape	nucleus	30.28	17.42
VIT_12s0055g00340.t01	Wine grape	nucleus	24.29	15.81
VIT_14s0108g00120.t01	Wine grape	nucleus	24.92	15.74
VIT_01s0026g01730.t01	Wine grape	nucleus	26.81	14.31
VIT_17s0000g05810.t01	Wine grape	nucleus	27.13	14.21

Protein Annotations

EntrezGene:100264507	wikigene:100264507	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:ADU02584	ProteinID:ADU02584.1
EMBL:AM461369	ProteinID:CAN65715	ProteinID:CAN65715.1	ProteinID:CCB46821	ProteinID:CCB46821.1	UniProt:F6H3I6
EMBL:FN595231	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
EMBL:GU270833	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100264507	wikigene:LOC100264507	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF3	SMART:SM00774	SUPFAM:SSF118290	TIGR:TC53734
UniParc:UPI000198311F	ArrayExpress:VIT_04s0008g05760	EnsemblPlantsGene:VIT_04s0008g05760	EnsemblPlants:VIT_04s0008g05760.t01	unigene:Vvi.11425	unigene:Vvi.6808
InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:5265887..5267902

Molecular Weight (calculated)

35265.6 Da

IEP (calculated)

8.320

GRAVY (calculated)

-0.718

Length

317 amino acids

Sequence
(BLAST)

001: MEFEFIDTSL GLDLKPNPPA NSLGDFSPKR GDCVDVDVER KPSPVLKEDT GGLVEELRRM STENKKLTEL LSIMCENYNA LHNHLKELMR KNSDHQLFNS
101: RKRKAESEDN INNIHGSSGN NTESISSDED SSKKPRESTK GKVSRVVVKT EKSDNSLLLK DGYQWRKYGQ KVTRDNPSPR AYFKCSFAPT CPVKKKVQRS
201: AEDQSLLIAT YEGEHNHQQP SPVEVSLGFN RAATPASVLS PASMVSPRPT VTLDLIQPGL ANNTAKNSVH DVKEKPIVQQ FLVEQMASSL TRDPSFTAAL
301: AAAISGRILD QTQIEKW

Best Arabidopsis Sequence Match ( AT1G80840.1 )
(BLAST)

001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK

Arabidopsis Description

WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.