Factsheet for VIT_04s0008g05750.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05362	Soybean	nucleus	47.13	44.24
KRH15655	Soybean	nucleus	46.74	43.88
KRH54838	Soybean	cytosol, nucleus	36.02	40.0
KRH61668	Soybean	nucleus	36.02	40.0
VIT_09s0018g00240.t01	Wine grape	nucleus	39.08	32.8
VIT_04s0008g05760.t01	Wine grape	nucleus	38.7	31.86
VIT_07s0005g02570.t01	Wine grape	nucleus	35.63	18.38
VIT_10s0116g01200.t01	Wine grape	nucleus	34.48	16.82
VIT_12s0059g00880.t01	Wine grape	nucleus	36.02	15.85
VIT_12s0055g00340.t01	Wine grape	nucleus	29.12	15.61
VIT_14s0108g00120.t01	Wine grape	nucleus	29.5	15.34
VIT_19s0090g00840.t01	Wine grape	nucleus	31.8	15.06
VIT_01s0026g01730.t01	Wine grape	nucleus	30.27	13.3
VIT_17s0000g05810.t01	Wine grape	nucleus	28.74	12.4

Protein Annotations

EntrezGene:100266177	wikigene:100266177	MapMan:15.5.22	Gene3D:2.20.25.80	EMBL:AM485710	ProteinID:CAN84058
ProteinID:CAN84058.1	ProteinID:CCB46820	ProteinID:CCB46820.1	ncoils:Coil	UniProt:F6H3I5	EMBL:FN595231
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657
InterPro:IPR036576	EntrezGene:LOC100266177	wikigene:LOC100266177	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429
PANTHER:PTHR31429:SF38	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002108FDF	ArrayExpress:VIT_04s0008g05750	EnsemblPlantsGene:VIT_04s0008g05750
EnsemblPlants:VIT_04s0008g05750.t01	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002282812	RefSeq:XP_002282812.2	SEG:seg

Description

No Description!

Coordinates

chr4:-:5247432..5248815

Molecular Weight (calculated)

28877.3 Da

IEP (calculated)

9.342

GRAVY (calculated)

-0.716

Length

261 amino acids

Sequence
(BLAST)

001: MAALDGGIRN HKVEVLKIEL ERLRKENEDL RLGLEIMGSK YEVLQAHLQK NMATISPDHG SSQDSNKRPR TEEVSVAKAS QVFVRTNPKD KSLTVKDGFQ
101: WRKYGQKITK DNPSPRAYFR CSMAPQCPVK KKVQRCMEDS SILVATYEGA HNHEPPHDAP AGGSSYSPDS PIKGLVANFP CPTTVDPFQP TVTLDLTLSG
201: TGTGTGQEKR RPQNFMEDYR KSNCGRVEEY VASLTKDTNF TLALAAAVAR SITDQPKPTK A

Best Arabidopsis Sequence Match ( AT4G31800.1 )
(BLAST)

001: MDGSSFLDIS LDLNTNPFSA KLPKKEVSVL ASTHLKRKWL EQDESASELR EELNRVNSEN KKLTEMLARV CESYNELHNH LEKLQSRQSP EIEQTDIPIK
101: KRKQDPDEFL GFPIGLSSGK TENSSSNEDH HHHHQQHEQK NQLLSCKRPV TDSFNKAKVS TVYVPTETSD TSLTVKDGFQ WRKYGQKVTR DNPSPRAYFR
201: CSFAPSCPVK KKVQRSAEDP SLLVATYEGT HNHLGPNASE GDATSQGGSS TVTLDLVNGC HRLALEKNER DNTMQEVLIQ QMASSLTKDS KFTAALAAAI
301: SGRLMEQSRT

Arabidopsis Description

WRKY18WRKY like transcription factor [Source:UniProtKB/TrEMBL;Acc:Q0WTZ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.