Factsheet for VIT_12s0055g00340.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH58361	Soybean	nucleus	51.33	51.55
CDX81493	Canola	nucleus	32.24	50.65
PGSC0003DMT400076591	Potato	nucleus	42.92	50.61
Bra004285.1-P	Field mustard	nucleus	32.65	48.48
Solyc01g104550.2.1	Tomato	nucleus	46.41	47.58
CDY01891	Canola	nucleus	32.03	47.56
CDX96044	Canola	nucleus	32.03	47.56
AT1G68150.1	Thale cress	nucleus	33.68	43.85
GSMUA_Achr3P20290_001	Banana	nucleus	32.85	41.78
GSMUA_Achr7P18820_001	Banana	nucleus	34.91	37.86
GSMUA_Achr6P02330_001	Banana	nucleus	28.34	37.4
GSMUA_Achr10P...	Banana	nucleus	36.76	37.37
Zm00001d018203_P001	Maize	nucleus	37.37	31.43
EES05866	Sorghum	nucleus	36.96	31.14
TraesCS6D01G306300.1	Wheat	nucleus	34.91	30.41
TraesCS6B01G357600.1	Wheat	nucleus	34.91	30.36
TraesCS6A01G326500.2	Wheat	nucleus	33.68	29.66
VIT_04s0008g05750.t01	Wine grape	nucleus	15.61	29.12
Os02t0770500-00	Rice	nucleus	37.99	28.51
VIT_14s0108g00120.t01	Wine grape	nucleus	28.95	28.09
HORVU6Hr1G079710.2	Barley	nucleus	34.29	26.94
VIT_09s0018g00240.t01	Wine grape	nucleus	17.04	26.69
VIT_07s0005g02570.t01	Wine grape	nucleus	27.1	26.09
VIT_10s0116g01200.t01	Wine grape	nucleus	28.54	25.98
VIT_04s0008g05760.t01	Wine grape	nucleus	15.81	24.29
VIT_01s0026g01730.t01	Wine grape	nucleus	29.57	24.24
VIT_17s0000g05810.t01	Wine grape	nucleus	29.98	24.13
VIT_19s0090g00840.t01	Wine grape	nucleus	27.1	23.96
VIT_12s0059g00880.t01	Wine grape	nucleus	28.34	23.27

Protein Annotations

EntrezGene:100264153	wikigene:100264153	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CCB46132	ProteinID:CCB46132.1
ncoils:Coil	UniProt:F6H1R3	EMBL:FN595228	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100264153	wikigene:LOC100264153
PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF24	SMART:SM00774	SUPFAM:SSF118290
UniParc:UPI0002108112	ArrayExpress:VIT_12s0055g00340	EnsemblPlantsGene:VIT_12s0055g00340	EnsemblPlants:VIT_12s0055g00340.t01	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_002266017	RefSeq:XP_002266017.1	RefSeq:XP_010657556.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr12:+:13065135..13067116

Molecular Weight (calculated)

53646.3 Da

IEP (calculated)

4.992

GRAVY (calculated)

-0.823

Length

487 amino acids

Sequence
(BLAST)

001: MREGRPMEID LSLKIDDEGE GDGEGEEEAE GEEGDEQVQR EDQQKEKETG HVEDKGEDVE AASSVEENLK TEELCVLQME MNRMKEENKV LRKVVEETMK
101: DYRDLQMKFA LIQQNKQNKD LQISLSLHGK DRNLQDPRRI SKVLNINDQI LPSSPEDNEE SELGLSLRLK PNTREEREED GEANKEETVS FTPIPNRLPR
201: TDLAAIKSHA ASPPNRKARV SVRARCQTAT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA PGCPVRKQVQ RCLEDMSILI TTYEGTHNHP LPVGATAMAS
301: TTSAAASFML VDSSNPLSEA SLSYPNSHFI NPGSSSSMIR SINPNDPSKG IVLDLTNTTP SDPQQFPLQS SSHSSAQLGF SWMPSKPSYH SGGSTNIANN
401: LFPNPRAAEE DRSIAENVTA ITSNPDFRVA VAAAITSFIN KESHTSTHTT GPPFANPRDG EGGGGSSGNN WVLESLPASV KPYRHSP

Best Arabidopsis Sequence Match ( AT1G68150.1 )
(BLAST)

001: MGFDFSTSKS KAKRQKRIEV RFASPLMGID LSLKLEAEEK KKEIEGSKHS RENKEDEEHD ASGDEDEQMV KEDEDDSSSL GLRTREEENE REELLQLQIQ
101: MESVKEENTR LRKLVEQTLE DYRHLEMKFP VIDKTKKMDL EMFLGVQGKR CVDITSKARK RGAERSPSME REIGLSLSLE KKQKQEESKE AVQSHHQRYN
201: SSSLDMNMPR IISSSQGNRK ARVSVRARCE TATMNDGCQW RKYGQKTAKG NPCPRAYYRC TVAPGCPVRK QVQRCLEDMS ILITTYEGTH NHPLPVGATA
301: MASTASTSPF LLLDSSDNLS HPSYYQTPQA IDSSLITYPQ NSSYNNRTIR SLNFDGPSRG DHVSSSQNRL NWMM

Arabidopsis Description

WRKY9WRKY9 [Source:UniProtKB/TrEMBL;Acc:A0A178WJS2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.