Factsheet for VIT_19s0090g00840.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73787	Soybean	nucleus	33.94	44.52
KRH46231	Soybean	nucleus	39.2	44.44
KRG98705	Soybean	nucleus	38.48	44.35
VIT_10s0116g01200.t01	Wine grape	nucleus	42.65	43.93
VIT_12s0059g00880.t01	Wine grape	nucleus	45.55	42.33
TraesCSU01G001200.1	Wheat	nucleus	42.29	40.03
TraesCS1D01G412500.1	Wheat	nucleus	42.11	39.26
TraesCS1B01G434300.1	Wheat	nucleus	42.11	37.06
VIT_07s0005g02570.t01	Wine grape	nucleus	31.58	34.39
KXG22547	Sorghum	nucleus	39.2	34.23
Zm00001d009595_P001	Maize	nucleus	37.75	34.1
VIT_09s0018g00240.t01	Wine grape	nucleus	18.33	32.48
Os05t0567200-00	Rice	nucleus	34.48	32.37
VIT_04s0008g05750.t01	Wine grape	nucleus	15.06	31.8
Zm00001d039044_P001	Maize	nucleus	35.39	31.05
VIT_04s0008g05760.t01	Wine grape	nucleus	17.42	30.28
VIT_12s0055g00340.t01	Wine grape	nucleus	23.96	27.1
VIT_14s0108g00120.t01	Wine grape	nucleus	24.14	26.49
VIT_01s0026g01730.t01	Wine grape	nucleus	26.32	24.41
VIT_17s0000g05810.t01	Wine grape	nucleus	26.32	23.97

Protein Annotations

EntrezGene:100245129	wikigene:100245129	MapMan:15.5.22	Gene3D:2.20.25.80	EMBL:AM448856	ProteinID:CAN78720
ProteinID:CAN78720.1	ProteinID:CCB50679	ProteinID:CCB50679.1	ncoils:Coil	UniProt:F6HEQ5	EMBL:FN595751
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657
InterPro:IPR036576	EntrezGene:LOC100245129	wikigene:LOC100245129	PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429
PANTHER:PTHR31429:SF31	SMART:SM00774	SUPFAM:SSF118290	UniParc:UPI0002109E2D	ArrayExpress:VIT_19s0090g00840	EnsemblPlantsGene:VIT_19s0090g00840
EnsemblPlants:VIT_19s0090g00840.t01	unigene:Vvi.17716	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	RefSeq:XP_002279019	RefSeq:XP_002279019.2
RefSeq:XP_010644476.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr19:-:6882399..6884987

Molecular Weight (calculated)

59253.3 Da

IEP (calculated)

9.590

GRAVY (calculated)

-0.646

Length

551 amino acids

Sequence
(BLAST)

001: MDNGGSSGGG RPLSDNHSHP SAFSFSKPFK MDGGGGGVVV GGGVSSLVPN RRINEMDFFA QKETARVDVK RETTAHDGLV QGFHINTGLN LHLASGGSEK
101: SSVDGGTSPS NKEKLNMSDK MVGLRAELEN MNKENKQLRA MLSQVNNNYS ALQMHVVTLM QRQHNRRAEI SLANEVNTEG KVGERNRNET IVPRQFMDLG
201: RASMAEKDES SPSWSGSRSP QTNEDASRES RRRKTGSTSN ENKDGGREES SDQSLQGGLP NKVPKFNCSQ NVEQASEAMS MMRKARVSVR ARSEASMISD
301: GCQWRKYGQK MAKGNPCPRA YYRCTMATAC PVRKQVQRSA EDRTVLITTY EGHHNHPLPP AAMAMASTTS AAATMLLSGS MPSSDGIMSS SFHSRTMFPC
401: SPSLATISAS APFPTITLDL THSPNLLQHQ RPNAQFHVPF QNLPQNFAPG SHAFNPVLHS QSKFSALQSS PEMQPPQVGT EQVLKPSSSS SDTVTAATAA
501: ITADPNFTAA LVAAITSIIG NVHPNNSSNS STNTRSTNVD NNIGNSNLVG N

Best Arabidopsis Sequence Match ( AT4G04450.1 )
(BLAST)

001: MFRFPVSLGG GPRENLKPSD EQHQRAVVNE VDFFRSAEKR DRVSREEQNI IADETHRVHV KRENSRVDDH DDRSTDHINI GLNLLTANTG SDESMVDDGL
101: SVDMEEKRTK CENAQLREEL KKASEDNQRL KQMLSQTTNN FNSLQMQLVA VMRQQEDHHH LATTENNDNV KNRHEVPEMV PRQFIDLGPH SDEVSSEERT
201: TVRSGSPPSL LEKSSSRQNG KRVLVREESP ETESNGWRNP NKVPKHHASS SICGGNGSEN ASSKVIEQAA AEATMRKARV SVRARSEAPM LSDGCQWRKY
301: GQKMAKGNPC PRAYYRCTMA VGCPVRKQVQ RCAEDRTILI TTYEGNHNHP LPPAAMNMAS TTTAAASMLL SGSTMSNQDG LMNPTNLLAR TILPCSSSMA
401: TISASAPFPT ITLDLTESPN GNNPTNNPLM QFSQRSGLVE LNQSVLPHMM GQALYYNQQS KFSGLHMPSQ PLNAGESVSA ATAAIASNPN FAAALAAAIT
501: SIINGSNNQQ NGNNNNSNVT TSNVDNRQ

Arabidopsis Description

WRKY42WRKY transcription factor 42 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEC3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.