Factsheet for VIT_17s0000g05810.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86714	Canola	nucleus	11.74	83.53
VIT_14s0108g00120.t01	Wine grape	nucleus	44.13	53.19
KRH56941	Soybean	nucleus	48.93	52.95
KRH54509	Soybean	nucleus	52.73	51.87
KRH03442	Soybean	nucleus	50.74	51.17
KRH63398	Soybean	nucleus	43.97	50.09
VIT_01s0026g01730.t01	Wine grape	nucleus	48.43	49.33
Bra025693.1-P	Field mustard	nucleus	22.48	47.39
CDY26717	Canola	nucleus	22.48	47.39
Solyc06g070990.2.1	Tomato	nucleus	49.59	46.23
PGSC0003DMT400046570	Potato	nucleus	39.5	45.52
Solyc03g113120.2.1	Tomato	nucleus	38.84	44.85
Os06t0146250-00	Rice	nucleus	41.98	42.05
Zm00001d045375_P001	Maize	nucleus	17.02	41.2
Bra031053.1-P	Field mustard	nucleus	31.74	40.85
OQU75809	Sorghum	nucleus	41.82	40.48
TraesCS3B01G130000.1	Wheat	nucleus	32.23	39.8
TraesCS3D01G113300.1	Wheat	nucleus	32.23	39.63
Os01t0185900-01	Rice	nucleus	32.73	39.05
Bra016535.1-P	Field mustard	nucleus	30.58	39.03
AT1G18860.1	Thale cress	nucleus	34.05	39.02
TraesCS7D01G092600.1	Wheat	nucleus	39.01	39.01
HORVU7Hr1G021260.1	Barley	nucleus	38.51	38.26
TraesCS7D01G092500.2	Wheat	nucleus	37.36	38.24
CDY21693	Canola	nucleus	32.73	38.15
CDX81900	Canola	nucleus	32.4	37.76
Zm00001d008794_P001	Maize	nucleus	33.55	37.59
CDX83804	Canola	nucleus	31.9	37.48
CDX96692	Canola	nucleus	31.74	37.14
HORVU3Hr1G020210.2	Barley	nucleus	32.23	37.07
Zm00001d039532_P001	Maize	nucleus	33.06	36.56
EES02331	Sorghum	nucleus	33.06	36.5
CDY19255	Canola	nucleus	12.56	31.93
TraesCS7D01G092400.1	Wheat	nucleus	31.57	31.57
TraesCS7D01G092300.1	Wheat	nucleus	31.41	31.41
VIT_10s0116g01200.t01	Wine grape	nucleus	27.44	31.03
VIT_07s0005g02570.t01	Wine grape	nucleus	25.62	30.63
VIT_12s0055g00340.t01	Wine grape	nucleus	24.13	29.98
CDX86713	Canola	nucleus	5.62	28.81
VIT_04s0008g05750.t01	Wine grape	nucleus	12.4	28.74
VIT_09s0018g00240.t01	Wine grape	nucleus	14.71	28.62
VIT_12s0059g00880.t01	Wine grape	nucleus	27.27	27.82
VIT_04s0008g05760.t01	Wine grape	nucleus	14.21	27.13
VIT_19s0090g00840.t01	Wine grape	nucleus	23.97	26.32
Bra025692.1-P	Field mustard	nucleus	10.08	25.31
CDY72612	Canola	nucleus	10.08	25.31
TraesCS7A01G096200.1	Wheat	nucleus	9.92	24.79

Protein Annotations

EntrezGene:100250047	wikigene:100250047	MapMan:15.5.22	Gene3D:2.20.25.80	ProteinID:CBI15258	ProteinID:CBI15258.3
ncoils:Coil	UniProt:D7SIE7	EMBL:FN594950	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	EntrezGene:LOC100250047	wikigene:LOC100250047
PFAM:PF03106	PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF24	SMART:SM00774	SUPFAM:SSF118290
UniParc:UPI0001BE0B77	ArrayExpress:VIT_17s0000g05810	EnsemblPlantsGene:VIT_17s0000g05810	EnsemblPlants:VIT_17s0000g05810.t01	InterPro:WRKY_dom	InterPro:WRKY_dom_sf
RefSeq:XP_002267867	RefSeq:XP_002267867.2	RefSeq:XP_010663394.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:+:6316168..6320034

Molecular Weight (calculated)

65182.3 Da

IEP (calculated)

7.689

GRAVY (calculated)

-0.746

Length

605 amino acids

Sequence
(BLAST)

001: MNKEERAMEA ALRRSGHGVV VKEERRPEAP CDDDEGCRDK AAAKADKTKS SSPRREDLNC SSVQLPAISK MERSISSAEP DSGASSSSHK DQDDQLESAK
101: AEMGEVREEN QRLRMYLDQI MKDYKTLQMQ FYDVVRQEAK ESTEKASILQ IEEPEFVSLS LGRVSSDPKK DEKNKTTSKV EDDGVKGGLS LGLDCKFEVL
201: NPSPENSFGG PKEAAGESWP PSKSLKTMRT GDDEISQQNP AKRCRVSVRA RCDTPTMNDG CQWRKYGQKI AKGNPCPRAY YRCTVAPSCP VRKQVQRFAE
301: DMSILITTYE GTHNHPLPYS ATAMASTTSA AASMLMSGSS SSQSGSGSCP LSATSADLHG VNFYLSDNSK SKQFYSINSS LSAVSSNPTI TLDLTTASSS
401: SSSSSHFNRL SSNYPPPRFP STGFNFSSSE SNSLPISWSN GLLSYGSTTT TQPYNRNHTG SQNSGRHTQE NFFHPHVQKN NPAPVQQPLP DPIAAATKAI
501: ASDPSFQSAL AAALTSIMGA NGGTHANHSG GEAFGQKLMW GSESLPAVST YQSTSKGNGC ASSYLNKSPP TNSQPGSLMF LPPALPFSTS KNASASPAEN
601: REHTS

Best Arabidopsis Sequence Match ( AT5G15130.1 )
(BLAST)

001: MEVLLKLPSS ESPLKDKFGS VQIHEANKGD GDHQELESAK AEMSEVKEEN EKLKGMLERI ESDYKSLKLR FFDIIQQEPS NTATKNQNMV DHPKPTTTDL
101: SSFDQERELV SLSLGRRSSS PSDSVPKKEE KTDAISAEVN ADEELTKAGL TLGINNGNGG EPKEGLSMEN RANSGSEEAW APGKVTGKRS SPAPASGGDA
201: DGEAGQQNHV KRARVCVRAR CDTPTMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAPGCPV RKQVQRCADD MSILITTYEG THSHSLPLSA TTMASTTSAA
301: ASMLLSGSSS SPAAEMIGNN LYDNSRFNNN NKSFYSPTLH SPLHPTVTLD LTAPQHSSSS SSSLLSLNFN KFSNSFQRFP STSLNFSSTS STSSNPSTLN
401: LPAIWGNGYS SYTPYPYNNV QFGTSNLGKT VQNSQSLTET LTKALTSDPS FHSVIAAAIS TMVGSNGEQQ IVGPRHSISN NIQQTNTTNN NKGCGGYFSS
501: LLMSNIMASN QTGASLDQPS SQLPPFSMFK NSSSSSSTTN FVNKEEKS

Arabidopsis Description

WRKY72Probable WRKY transcription factor 72 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.