Factsheet for Solyc06g070990.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86714	Canola	nucleus	11.09	84.71
VIT_17s0000g05810.t01	Wine grape	nucleus	46.23	49.59
Solyc03g113120.2.1	Tomato	nucleus	39.29	48.66
KRH56941	Soybean	nucleus	41.14	47.76
KRH03442	Soybean	nucleus	43.14	46.67
KRH54509	Soybean	nucleus	42.84	45.2
KRH63398	Soybean	nucleus	36.83	45.01
Bra025693.1-P	Field mustard	nucleus	19.26	43.55
CDY26717	Canola	nucleus	19.26	43.55
Solyc02g067430.2.1	Tomato	nucleus	26.5	39.09
Solyc05g007110.2.1	Tomato	nucleus	23.57	39.03
Bra031053.1-P	Field mustard	nucleus	28.04	38.72
Bra016535.1-P	Field mustard	nucleus	28.04	38.4
TraesCS3B01G130000.1	Wheat	nucleus	28.51	37.76
TraesCS3D01G113300.1	Wheat	nucleus	28.51	37.6
Zm00001d045375_P001	Maize	nucleus	14.48	37.6
CDX83804	Canola	nucleus	29.28	36.89
CDX81900	Canola	nucleus	29.43	36.8
CDX96692	Canola	nucleus	29.28	36.75
CDY21693	Canola	nucleus	29.12	36.42
AT1G18860.1	Thale cress	nucleus	29.43	36.17
Os06t0146250-00	Rice	nucleus	33.44	35.93
Os01t0185900-01	Rice	nucleus	27.73	35.5
HORVU3Hr1G020210.2	Barley	nucleus	28.66	35.36
TraesCS7D01G092500.2	Wheat	nucleus	31.43	34.52
HORVU7Hr1G021260.1	Barley	nucleus	32.36	34.48
OQU75809	Sorghum	nucleus	32.97	34.24
TraesCS7D01G092600.1	Wheat	nucleus	31.9	34.21
Zm00001d008794_P001	Maize	nucleus	28.04	33.7
Solyc12g042590.1.1	Tomato	nucleus	10.94	32.87
Solyc02g032950.2.1	Tomato	nucleus	24.65	32.13
EES02331	Sorghum	nucleus	27.12	32.12
Zm00001d039532_P001	Maize	nucleus	26.66	31.63
CDY19255	Canola	nucleus	11.4	31.09
TraesCS7D01G092400.1	Wheat	nucleus	28.04	30.08
TraesCS7D01G092300.1	Wheat	nucleus	27.73	29.75
Solyc02g080890.2.1	Tomato	nucleus	24.96	29.45
Solyc01g104550.2.1	Tomato	nucleus	20.8	28.42
Solyc08g067360.2.1	Tomato	nucleus	10.79	27.13
Solyc07g051840.2.1	Tomato	nucleus	25.58	26.31
CDX86713	Canola	nucleus	4.62	25.42
Solyc08g067340.2.1	Tomato	nucleus	9.71	24.9
Solyc06g068460.2.1	Tomato	nucleus	13.56	24.44
Solyc03g116890.2.1	Tomato	nucleus	12.33	22.86
Bra025692.1-P	Field mustard	nucleus	8.47	22.82
CDY72612	Canola	nucleus	8.47	22.82
TraesCS7A01G096200.1	Wheat	nucleus	8.32	22.31

Protein Annotations

MapMan:15.5.22	Gene3D:2.20.25.80	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:IPR003657	InterPro:IPR036576	UniProt:K4C8H2	PFAM:PF03106
PFscan:PS50811	PANTHER:PTHR31429	PANTHER:PTHR31429:SF24	SMART:SM00774	SUPFAM:SSF118290	EnsemblPlantsGene:Solyc06g070990.2
EnsemblPlants:Solyc06g070990.2.1	UniParc:UPI0002766D3A	InterPro:WRKY_dom	InterPro:WRKY_dom_sf	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:43595816..43600228

Molecular Weight (calculated)

71660.7 Da

IEP (calculated)

6.511

GRAVY (calculated)

-0.995

Length

649 amino acids

Sequence
(BLAST)

001: MENKNKAEYY SPDDEDRDID NQENIIHQFG KGRKEREDDK SKPSSPHHKD YMNIDNIEGG AVNVMVKRER SPPEHNSMAS SSTHKEQDDQ LASAKDEMRE
101: VMEENQRLRM HLDRMMKEYR NLQNQFHDIV QKETDQKSSS TTVNTSTTHH DHESDQEADQ LVSLSLGRTT SDMKKDDLSK ILKKDKVHDD EGVSNNNKSL
201: DLGLDCKFET TPTECSPVNY SPENSLDDIQ ANKDENEETS NKNLKTMRNN GDGDDVSQQN PTKRARVSVR VRCDAPTMND GCQWRKYGQK IAKGNPCPRA
301: YYRCTVAPNC PVRKQVQRCA EDMSILITTY EGTHNHTLPL SATAMASTTS AAASMLLSGS SNSSDPNPQV TATTTTTPTT TTSANINGLN FYLSDTSKHH
401: KSPYYFPNSS ISASAPNSLP TITLDLTSTS SSSPSSLSHL NRMTQNFPPR YNYNNNNSTT NLNFSSVLES NSLPISWTNN YPNQTYNKNN QNFGPLTFSS
501: RSSQDNIFQS YLQKNTTQSS LPPDTIAAAT KAITSDPNFH SALAAALTSI IGNSPIENKS VHNLNVTEPF PILSSLPSSS NPNKCSSSFL NKPTSSASAN
601: NNNNSNSNSN STQQPGNNSM VFFGQSSSSL PFSTSNKGKS TSPGDSKFD

Best Arabidopsis Sequence Match ( AT5G15130.1 )
(BLAST)

001: MEVLLKLPSS ESPLKDKFGS VQIHEANKGD GDHQELESAK AEMSEVKEEN EKLKGMLERI ESDYKSLKLR FFDIIQQEPS NTATKNQNMV DHPKPTTTDL
101: SSFDQERELV SLSLGRRSSS PSDSVPKKEE KTDAISAEVN ADEELTKAGL TLGINNGNGG EPKEGLSMEN RANSGSEEAW APGKVTGKRS SPAPASGGDA
201: DGEAGQQNHV KRARVCVRAR CDTPTMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAPGCPV RKQVQRCADD MSILITTYEG THSHSLPLSA TTMASTTSAA
301: ASMLLSGSSS SPAAEMIGNN LYDNSRFNNN NKSFYSPTLH SPLHPTVTLD LTAPQHSSSS SSSLLSLNFN KFSNSFQRFP STSLNFSSTS STSSNPSTLN
401: LPAIWGNGYS SYTPYPYNNV QFGTSNLGKT VQNSQSLTET LTKALTSDPS FHSVIAAAIS TMVGSNGEQQ IVGPRHSISN NIQQTNTTNN NKGCGGYFSS
501: LLMSNIMASN QTGASLDQPS SQLPPFSMFK NSSSSSSTTN FVNKEEKS

Arabidopsis Description

WRKY72Probable WRKY transcription factor 72 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXG8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.