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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc03g116890.2.1
Solyc06g068460.2.1
Solyc08g067340.2.1
Solyc08g067360.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G80840.1 Solyc03g116890.2.1 AT1G80840.1 16603654
AT1G80840.1 Solyc06g068460.2.1 AT1G80840.1 16603654
AT1G80840.1 Solyc08g067340.2.1 AT2G25000.1 16603654
AT1G80840.1 Solyc08g067360.2.1 AT2G25000.1 16603654
AT1G80840.1 Solyc08g067340.2.1 AT4G31800.1 16603654
AT1G80840.1 Solyc08g067360.2.1 AT4G31800.1 16603654
AT1G80840.1 Solyc08g067340.2.1 AT4G31800.1 18776063
AT1G80840.1 Solyc08g067360.2.1 AT4G31800.1 18776063
AT1G80840.1 Solyc08g067340.2.1 AT4G31800.1 21798944
AT1G80840.1 Solyc08g067360.2.1 AT4G31800.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400073396 Potato nucleus 94.72 94.72
VIT_09s0018g00240.t01 Wine grape nucleus 53.89 62.38
KRH47344 Soybean nucleus 50.56 58.52
KRH23643 Soybean nucleus 50.0 58.25
KRH44560 Soybean nucleus 50.28 57.83
GSMUA_Achr7P19340_001 Banana nucleus 30.83 57.81
Solyc03g116890.2.1 Tomato nucleus 55.83 57.43
Solyc12g042590.1.1 Tomato nucleus 33.33 55.56
KRH09652 Soybean nucleus 48.33 52.73
Bra008435.1-P Field mustard nucleus 42.22 52.41
CDY22299 Canola nucleus 42.22 52.41
CDY67287 Canola nucleus 41.94 52.07
CDX79347 Canola nucleus 42.5 51.34
AT1G80840.1 Thale cress nucleus 42.78 50.99
CDX67971 Canola nucleus 41.94 50.84
Bra003588.1-P Field mustard nucleus 41.94 50.84
CDX88573 Canola nucleus 42.5 50.83
GSMUA_Achr2P05100_001 Banana nucleus 26.67 50.53
Bra035148.1-P Field mustard nucleus 41.94 50.33
CDX87347 Canola nucleus 41.94 50.33
GSMUA_Achr10P... Banana nucleus 31.11 48.28
Solyc08g067360.2.1 Tomato nucleus 34.17 47.67
GSMUA_Achr5P16460_001 Banana nucleus 30.83 47.23
Solyc08g067340.2.1 Tomato nucleus 33.06 47.04
HORVU5Hr1G065380.2 Barley nucleus 22.22 45.98
GSMUA_Achr11P... Banana nucleus 30.56 44.9
GSMUA_Achr3P13440_001 Banana nucleus 33.33 43.64
GSMUA_Achr7P05200_001 Banana nucleus 33.61 43.21
GSMUA_Achr10P... Banana nucleus 33.89 42.36
GSMUA_Achr4P01930_001 Banana extracellular, golgi 32.5 40.48
GSMUA_Achr7P16090_001 Banana endoplasmic reticulum, nucleus, plastid 24.72 39.91
Zm00001d020492_P001 Maize nucleus 33.33 39.74
Os09t0417600-02 Rice nucleus 35.0 38.53
TraesCS5B01G224000.1 Wheat nucleus 35.0 38.07
TraesCS5D01G232800.1 Wheat nucleus 35.0 38.07
TraesCS5A01G225600.1 Wheat nucleus 34.72 37.76
EER98905 Sorghum nucleus, plastid 34.17 37.61
Zm00001d053746_P001 Maize nucleus 33.06 37.07
GSMUA_Achr1P10080_001 Banana nucleus 34.17 36.72
TraesCS5B01G224100.1 Wheat nucleus 33.61 36.67
TraesCS6A01G146900.1 Wheat nucleus 35.56 36.57
TraesCS6D01G136200.1 Wheat nucleus 35.0 36.21
Os02t0181300-01 Rice nucleus 35.0 36.21
TraesCS7D01G497400.1 Wheat nucleus 32.78 36.09
TraesCS7B01G418500.2 Wheat nucleus 32.78 35.87
TraesCS5D01G232700.1 Wheat nucleus 26.94 35.79
HORVU7Hr1G113830.1 Barley nucleus 31.67 35.74
HORVU6Hr1G028790.1 Barley nucleus 35.0 35.69
Os06t0649000-01 Rice nucleus 33.33 35.61
EES04642 Sorghum nucleus 35.83 35.44
TraesCS5A01G225500.1 Wheat nucleus 26.67 35.42
TraesCS7B01G418400.1 Wheat nucleus 31.94 35.28
TraesCS7A01G508800.1 Wheat nucleus 31.94 35.17
TraesCS6B01G175100.2 Wheat nucleus 34.44 34.93
TraesCS7A01G508700.1 Wheat nucleus 31.39 34.88
TraesCS7B01G419400.1 Wheat nucleus 31.11 34.78
TraesCS7D01G497800.1 Wheat nucleus 31.39 34.66
Zm00001d036726_P001 Maize nucleus 32.78 34.3
Zm00001d015515_P001 Maize nucleus 33.06 34.29
Zm00001d046805_P001 Maize nucleus 33.33 34.19
TraesCS7D01G497700.1 Wheat nucleus 31.11 34.15
Zm00001d020495_P001 Maize nucleus 25.0 33.83
TraesCS5D01G232900.1 Wheat nucleus 34.72 33.69
EER90124 Sorghum nucleus 31.94 33.63
EER88729 Sorghum nucleus 31.94 33.05
TraesCS7A01G509000.1 Wheat nucleus 31.67 32.76
KXG35639 Sorghum nucleus 26.67 32.54
TraesCS7B01G418600.1 Wheat nucleus 26.11 32.53
HORVU5Hr1G065420.15 Barley nucleus 35.0 32.23
Zm00001d005749_P001 Maize nucleus 30.0 30.77
TraesCS7D01G497300.1 Wheat plastid 31.67 30.65
Os09t0417800-01 Rice nucleus 26.11 29.56
HORVU7Hr1G113850.4 Barley nucleus, plastid 32.78 29.06
Solyc02g032950.2.1 Tomato nucleus 29.72 21.49
Solyc02g080890.2.1 Tomato nucleus 29.72 19.45
Solyc05g007110.2.1 Tomato nucleus 21.11 19.39
Solyc02g067430.2.1 Tomato nucleus 22.5 18.41
Solyc01g104550.2.1 Tomato nucleus 23.61 17.89
Solyc07g051840.2.1 Tomato nucleus 30.56 17.43
Solyc03g113120.2.1 Tomato nucleus 24.44 16.79
Solyc06g070990.2.1 Tomato nucleus 24.44 13.56
Protein Annotations
MapMan:15.5.22Gene3D:2.20.25.80ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0003700GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006351GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0043565InterPro:IPR003657InterPro:IPR036576UniProt:K4C821PFAM:PF03106
PFscan:PS50811PANTHER:PTHR31429PANTHER:PTHR31429:SF3SMART:SM00774SUPFAM:SSF118290EnsemblPlantsGene:Solyc06g068460.2
EnsemblPlants:Solyc06g068460.2.1UniParc:UPI00027663A3InterPro:WRKY_domInterPro:WRKY_dom_sfSEG:seg:
Description
No Description!
Coordinates
chr6:+:42433897..42435871
Molecular Weight (calculated)
39746.5 Da
IEP (calculated)
8.273
GRAVY (calculated)
-0.745
Length
360 amino acids
Sequence
(BLAST)
001: MEFTSLVDTS LDLSFRPRQK VLKQEVQSDF TGLSIERENM VVKNEAGDLL EELNRVSSEN KKLTEMLTVV CENYNALRNQ MMEYMSTQNG VAEDTSAGSR
101: KRKAESISNP VNNNNNNNNN MDVVHGRSSE SSSSDEESCC KKLREEHIKA KVTIVSMKTD ASDTSLIVKD GYQWRKYGQK VTRDNPCPRA YFRCSFAPGC
201: PVKKKVQRSI EDQSIVVATY EGEHNHPQTS KPESGPSTNT STASRLNVTT IAGTTTSVPC STTLNSSGPT ITLDLTAPKT VEKRDMKMNH STTSPTSGNS
301: IRTTTTTSAA GGEYQNRPEF QQFLIEQMAT SLTKDPSFKA ALAAAISGKI LQHNNQTGRW
Best Arabidopsis Sequence Match ( AT1G80840.1 )
(BLAST)
001: MDQYSSSLVD TSLDLTIGVT RMRVEEDPPT SALVEELNRV SAENKKLSEM LTLMCDNYNV LRKQLMEYVN KSNITERDQI SPPKKRKSPA REDAFSCAVI
101: GGVSESSSTD QDEYLCKKQR EETVVKEKVS RVYYKTEASD TTLVVKDGYQ WRKYGQKVTR DNPSPRAYFK CACAPSCSVK KKVQRSVEDQ SVLVATYEGE
201: HNHPMPSQID SNNGLNRHIS HGGSASTPVA ANRRSSLTVP VTTVDMIESK KVTSPTSRID FPQVQKLLVE QMASSLTKDP NFTAALAAAV TGKLYQQNHT
301: EK
Arabidopsis Description
WRKY40Probable WRKY transcription factor 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAH7]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.