Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS7B01G419400.1 | Wheat | nucleus | 90.8 | 91.93 |
TraesCS7A01G508700.1 | Wheat | nucleus | 89.88 | 90.43 |
HORVU7Hr1G113830.1 | Barley | nucleus | 85.58 | 87.46 |
TraesCS7B01G418600.1 | Wheat | nucleus | 77.3 | 87.2 |
TraesCS7B01G418500.2 | Wheat | nucleus | 83.74 | 82.98 |
TraesCS7D01G497300.1 | Wheat | plastid | 90.18 | 79.03 |
Os06t0649000-01 | Rice | nucleus | 61.66 | 59.64 |
Zm00001d036726_P001 | Maize | nucleus | 61.96 | 58.72 |
EER90124 | Sorghum | nucleus | 59.2 | 56.43 |
Zm00001d046805_P001 | Maize | nucleus | 60.43 | 56.13 |
EER88729 | Sorghum | nucleus | 59.51 | 55.75 |
TraesCS6B01G175100.2 | Wheat | nucleus | 54.91 | 50.42 |
GSMUA_Achr7P05200_001 | Banana | nucleus | 39.57 | 46.07 |
Bra019123.1-P | Field mustard | nucleus | 26.07 | 43.81 |
Solyc08g067340.2.1 | Tomato | nucleus | 31.9 | 41.11 |
PGSC0003DMT400073710 | Potato | nucleus | 27.3 | 41.01 |
KRH61669 | Soybean | nucleus | 27.61 | 40.91 |
Solyc12g042590.1.1 | Tomato | nucleus | 26.99 | 40.74 |
CDY22299 | Canola | nucleus | 36.2 | 40.69 |
Bra008435.1-P | Field mustard | nucleus | 36.2 | 40.69 |
VIT_09s0018g00240.t01 | Wine grape | nucleus | 38.65 | 40.51 |
CDY67287 | Canola | nucleus | 35.89 | 40.34 |
PGSC0003DMT400019061 | Potato | nucleus | 31.29 | 40.32 |
PGSC0003DMT400019058 | Potato | nucleus | 32.21 | 40.23 |
KRH47344 | Soybean | nucleus | 38.34 | 40.19 |
KRH23643 | Soybean | nucleus | 38.04 | 40.13 |
KRH15674 | Soybean | nucleus | 34.66 | 40.07 |
Bra003588.1-P | Field mustard | nucleus | 36.5 | 40.07 |
CDX67971 | Canola | nucleus | 36.5 | 40.07 |
AT1G80840.1 | Thale cress | nucleus | 37.12 | 40.07 |
Bra035148.1-P | Field mustard | nucleus | 36.81 | 40.0 |
CDX87347 | Canola | nucleus | 36.81 | 40.0 |
CDX88573 | Canola | nucleus | 36.5 | 39.53 |
Solyc08g067360.2.1 | Tomato | nucleus | 30.98 | 39.15 |
CDX79347 | Canola | nucleus | 35.58 | 38.93 |
KRH44560 | Soybean | nucleus | 37.12 | 38.66 |
CDX72327 | Canola | nucleus | 33.74 | 38.6 |
CDX75196 | Canola | nucleus | 33.13 | 38.16 |
AT2G25000.1 | Thale cress | nucleus | 31.29 | 37.64 |
KRH09652 | Soybean | nucleus | 37.42 | 36.97 |
VIT_04s0008g05760.t01 | Wine grape | nucleus | 35.58 | 36.59 |
Bra010220.1-P | Field mustard | nucleus | 34.05 | 36.04 |
CDY39879 | Canola | nucleus | 33.74 | 35.83 |
CDX68787 | Canola | nucleus | 34.66 | 35.42 |
Bra011299.1-P | Field mustard | nucleus | 34.05 | 35.02 |
KRH05350 | Soybean | nucleus | 33.44 | 34.94 |
TraesCS5B01G224100.1 | Wheat | nucleus | 34.66 | 34.24 |
AT4G31800.1 | Thale cress | nucleus | 32.52 | 34.19 |
TraesCS5B01G224000.1 | Wheat | nucleus | 34.66 | 34.14 |
KRH52329 | Soybean | nucleus | 31.29 | 33.01 |
PGSC0003DMT400073396 | Potato | nucleus | 35.58 | 32.22 |
Solyc06g068460.2.1 | Tomato | nucleus | 35.28 | 31.94 |
CDY70096 | Canola | nucleus | 33.44 | 31.59 |
Bra023983.1-P | Field mustard | nucleus | 33.44 | 31.59 |
Solyc03g116890.2.1 | Tomato | nucleus | 33.44 | 31.14 |
PGSC0003DMT400051047 | Potato | nucleus | 33.13 | 30.42 |
TraesCS3B01G130000.1 | Wheat | nucleus | 22.39 | 14.9 |
TraesCS3B01G199000.2 | Wheat | nucleus | 23.62 | 13.28 |
TraesCS1B01G434300.1 | Wheat | nucleus | 25.46 | 13.26 |
TraesCS6B01G357600.1 | Wheat | nucleus | 21.47 | 12.5 |
Protein Annotations
MapMan:15.5.22 | Gene3D:2.20.25.80 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR003657 | InterPro:IPR036576 | PFAM:PF03106 |
PFscan:PS50811 | PANTHER:PTHR31429 | PANTHER:PTHR31429:SF33 | SMART:SM00774 | SUPFAM:SSF118290 | EnsemblPlantsGene:TraesCS7B01G418400 |
EnsemblPlants:TraesCS7B01G418400.1 | InterPro:WRKY_dom | InterPro:WRKY_dom_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7B:+:686850061..686851169
Molecular Weight (calculated)
34871.1 Da
IEP (calculated)
9.581
GRAVY (calculated)
-0.541
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEQWMIGQT SLSLSLNVGG PRGPPPVTRD LVEEDFMSSM KNHEVVALEA ELRRVGEENR RLSDMLRALV AKYADLQGKV SGMMAAASAA NNHHQSSTTS
101: EGGSAASATR KRARSDSLDT AGRNPSPPLA AAGSSGCFAV SVTVGPDQAE CTSIHEPCNS KRVRADEAKA SRVSKLYVHA DPSDLSLVVK DGYQWRKYGQ
201: KVTKDNPCPR AYFRCSFAPS CQVKKKVQRS AEDKAVLVAT YDGDHNHAQP PKQQGSGSRK SGDAAAVRAS PAPVLVQQLQ RKQEASTADQ VADRKNLVEQ
301: MAATLTRDPG FKAALVSALS GRIPVA
101: EGGSAASATR KRARSDSLDT AGRNPSPPLA AAGSSGCFAV SVTVGPDQAE CTSIHEPCNS KRVRADEAKA SRVSKLYVHA DPSDLSLVVK DGYQWRKYGQ
201: KVTKDNPCPR AYFRCSFAPS CQVKKKVQRS AEDKAVLVAT YDGDHNHAQP PKQQGSGSRK SGDAAAVRAS PAPVLVQQLQ RKQEASTADQ VADRKNLVEQ
301: MAATLTRDPG FKAALVSALS GRIPVA
001: MDYDPNTNPF DLHFSGKLPK REVSASASKV VEKKWLVKDE KRNMLQDEIN RVNSENKKLT EMLARVCEKY YALNNLMEEL QSRKSPESVN FQNKQLTGKR
101: KQELDEFVSS PIGLSLGPIE NITNDKATVS TAYFAAEKSD TSLTVKDGYQ WRKYGQKITR DNPSPRAYFR CSFSPSCLVK KKVQRSAEDP SFLVATYEGT
201: HNHTGPHASV SRTVKLDLVQ GGLEPVEEKK ERGTIQEVLV QQMASSLTKD PKFTAALATA ISGRLIEHSR T
101: KQELDEFVSS PIGLSLGPIE NITNDKATVS TAYFAAEKSD TSLTVKDGYQ WRKYGQKITR DNPSPRAYFR CSFSPSCLVK KKVQRSAEDP SFLVATYEGT
201: HNHTGPHASV SRTVKLDLVQ GGLEPVEEKK ERGTIQEVLV QQMASSLTKD PKFTAALATA ISGRLIEHSR T
Arabidopsis Description
WRKY60Probable WRKY transcription factor 60 [Source:UniProtKB/Swiss-Prot;Acc:Q9SK33]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.