Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G414200.1 | Wheat | nucleus | 80.71 | 86.26 |
| TraesCS3B01G449000.1 | Wheat | cytosol | 82.14 | 77.44 |
| HORVU3Hr1G092230.1 | Barley | cytosol | 20.0 | 70.0 |
| KXG33957 | Sorghum | nucleus | 35.36 | 36.4 |
| GSMUA_Achr6P22990_001 | Banana | cytosol | 17.14 | 36.36 |
| KRG94362 | Soybean | extracellular | 30.71 | 26.79 |
| KRH07095 | Soybean | nucleus | 29.64 | 26.02 |
| AT3G27420.1 | Thale cress | nucleus | 22.5 | 25.82 |
| CDY42568 | Canola | plastid | 23.57 | 24.72 |
| CDY03968 | Canola | nucleus | 20.0 | 23.73 |
| CDY36364 | Canola | mitochondrion | 23.21 | 23.55 |
| Solyc02g067900.2.1 | Tomato | cytosol | 26.43 | 22.56 |
| VIT_14s0066g00150.t01 | Wine grape | nucleus | 29.29 | 22.34 |
| PGSC0003DMT400017933 | Potato | cytosol | 26.43 | 22.22 |
| AT5G40600.1 | Thale cress | endoplasmic reticulum | 19.64 | 16.92 |
| Bra033010.1-P | Field mustard | cytosol | 20.71 | 11.79 |
| CDY34147 | Canola | cytosol | 20.36 | 10.69 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G408700.2 | EnsemblPlantsGene:TraesCS3D01G408700 | Gene3D:1.20.1270.220 | InterPro:IPR027353 | InterPro:IPR038336 | InterPro:NET_dom |
| InterPro:NET_sf | PFAM:PF17035 | PFscan:PS51525 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr3D:+:523161492..523165531
Molecular Weight (calculated)
31739.1 Da
IEP (calculated)
6.414
GRAVY (calculated)
-0.464
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRDSSERNV SRIGPIEHYK NIISELLLGK EGTFSSGVTK QTEVVMAQYN RKEGEDSLPL FMEEIRGLSK CDMERLKHAL HEVFTILSGE VDEIFGCIFA
101: LSEFRSEKLP SNHGSGSYED GIAPPSVKKQ KTVTVSTIDA YEESHGHIDS DIFAQLTRDI RLIEESGKTR QEAAKMFSDG LLRKLAKMEQ GVYDLLDTVA
201: SKCRSMTTPE KIELGRRIRK LPETALDHMV EVVKMRRPEI LVSDKVSFSL GRLDDTTLWR LYYYVETALK AKQDRTVTPP
101: LSEFRSEKLP SNHGSGSYED GIAPPSVKKQ KTVTVSTIDA YEESHGHIDS DIFAQLTRDI RLIEESGKTR QEAAKMFSDG LLRKLAKMEQ GVYDLLDTVA
201: SKCRSMTTPE KIELGRRIRK LPETALDHMV EVVKMRRPEI LVSDKVSFSL GRLDDTTLWR LYYYVETALK AKQDRTVTPP
001: MPKRTAEACP SSEIQRSRGD TFGSYRSQVA ELLSLGERIS HHDQQEANER HSESVIGAGM SNVEKDNLNV LLRQCVRNLS PEVDEMQECV RSLYLISQLG
101: NKCQSSSPSD FVPEETGGAR EDDIQLLLRS DSDMVKNITS QYSNVLLSKL DNMQQELERL LDDVVATCRP MTRGEIRELQ KSIKELPERN LNRVAEIVGN
201: HCIASGRDFN DKVIVNLDQA DKVMLWRLHF YVGAVKRPRS SLPS
101: NKCQSSSPSD FVPEETGGAR EDDIQLLLRS DSDMVKNITS QYSNVLLSKL DNMQQELERL LDDVVATCRP MTRGEIRELQ KSIKELPERN LNRVAEIVGN
201: HCIASGRDFN DKVIVNLDQA DKVMLWRLHF YVGAVKRPRS SLPS
Arabidopsis Description
Bromodomain testis-specific protein [Source:UniProtKB/TrEMBL;Acc:Q8VY55]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.