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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • nucleus 1
  • plastid 1
  • mitochondrion 6
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:mitochondrion
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY42568 Canola plastid 91.67 94.76
CDY03968 Canola nucleus 40.94 47.88
AT5G40600.1 Thale cress endoplasmic reticulum 55.43 47.08
GSMUA_Achr6P22990_001 Banana cytosol 16.3 34.09
HORVU3Hr1G092230.1 Barley cytosol 9.06 31.25
VIT_14s0066g00150.t01 Wine grape nucleus 36.59 27.52
KRG94362 Soybean extracellular 30.07 25.86
KRH07095 Soybean nucleus 28.26 24.45
Solyc02g067900.2.1 Tomato cytosol 27.9 23.48
TraesCS3D01G408700.2 Wheat nucleus 23.55 23.21
PGSC0003DMT400017933 Potato cytosol 27.17 22.52
KXG33957 Sorghum nucleus 22.1 22.43
TraesCS3A01G414200.1 Wheat nucleus 21.01 22.14
CDY34147 Canola cytosol 41.3 21.39
TraesCS3B01G449000.1 Wheat cytosol 21.74 20.2
Protein Annotations
EnsemblPlants:CDY36364EnsemblPlantsGene:GSBRNA2T00060399001Gene3D:1.20.1270.220InterPro:IPR027353InterPro:IPR038336InterPro:NET_dom
InterPro:NET_sfPANTHER:PTHR22880PANTHER:PTHR22880:SF180PFAM:PF17035PFscan:PS51525ProteinID:CDY36364
ProteinID:CDY36364.1UniParc:UPI0004EF3813UniProt:A0A078HG22MapMan:35.2::
Description
BnaC04g32720DBnaC04g32720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HG22]
Coordinates
chrLK032374:-:100853..103594
Molecular Weight (calculated)
30942.3 Da
IEP (calculated)
7.603
GRAVY (calculated)
-0.441
Length
276 amino acids
Sequence
(BLAST)
001: MLVAALMKRT ERVRFLFSPV VIAPLRFQPP ATPLSDSTLT MTKRAAEEAT PSTDSSTTGP NFLGCYRDQV AELLSQEERL PHHEDGDTKK PSTEIIGAGI
101: SSLKREKLKA LLRQCVTDLI PGVDEMQSRA RSMLLMSQLS NKKLSISVTN EEVEDDIQLL MKSDPRLFKE IVKKHTDDVL TSLNNMQQQA EKLLDNVATS
201: CRPMSRDEKR DLQRSIKELP GGNLKRIAEI IKDHHAASGK AFSDEVTVNL EDEDNVMLWR LHFYVAAVKS ARKLAS
Best Arabidopsis Sequence Match ( AT5G40600.4 )
(BLAST)
001: MTIPVPLESL FPLLHRSVNC SFLPGGAILI SGDFSDFIVA MSKRAAEEMT PSLESNRTGP DFFGYYRAQV EELLSQEEKI PHHNHVDAKK SSAEIIGAEL
101: SDVKQEKLNA LLRQCVLNSI PEVDEMQSRV DSMYLMSQLS NKKRSTLPTN AESVIPEDPR CKEVEDDLRL LMKSDPSLVK EIVGKHSSDL LARLNERQQH
201: LEKLLDNVVT TCRPMSRGEK RDLQKSIKEL PAKNLERVAG IIKNHYVALG KEMPDDVFVI NMEEEDKVLL WRLHYFVVAV QSARKLAS
Arabidopsis Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27420.1); Has 18 /.../st hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). [Source:TAIR;Acc:AT5G40600]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.