Factsheet for Solyc02g067900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g091440.1.1
Solyc03g115580.2.1
Solyc06g073150.2.1
Solyc08g006660.1.1
Solyc08g022030.2.1
Solyc09g065820.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G27420.1	Solyc02g091440.1.1	AT1G66470.1	21798944
AT3G27420.1	Solyc06g073150.2.1	AT1G71230.1	21798944
AT3G27420.1	Solyc11g017300.1.1	AT1G71230.1	21798944
AT3G27420.1	Solyc03g115580.2.1	AT3G05210.1	21798944
AT3G27420.1	Solyc09g065820.2.1	AT4G02590.1	21798944
AT3G27420.1	Solyc08g006660.1.1	AT4G24840.1	21798944
AT3G27420.1	Solyc08g022030.2.1	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017933	Potato	cytosol	94.51	93.09
KRG94362	Soybean	extracellular	39.94	40.81
KRH07095	Soybean	nucleus	39.63	40.75
VIT_14s0066g00150.t01	Wine grape	nucleus	45.43	40.6
GSMUA_Achr6P22990_001	Banana	cytosol	14.02	34.85
CDY03968	Canola	nucleus	23.78	33.05
AT3G27420.1	Thale cress	nucleus	24.39	32.79
HORVU3Hr1G092230.1	Barley	cytosol	7.62	31.25
CDY42568	Canola	plastid	23.48	28.84
CDY36364	Canola	mitochondrion	23.48	27.9
TraesCS3D01G408700.2	Wheat	nucleus	22.56	26.43
AT5G40600.1	Thale cress	endoplasmic reticulum	24.09	24.31
TraesCS3A01G414200.1	Wheat	nucleus	18.6	23.28
TraesCS3B01G449000.1	Wheat	cytosol	20.12	22.22
KXG33957	Sorghum	nucleus	16.16	19.49
Bra033010.1-P	Field mustard	cytosol	22.56	15.04
CDY34147	Canola	cytosol	22.87	14.07

Protein Annotations

EnsemblPlants:Solyc02g067900.2.1	EnsemblPlantsGene:Solyc02g067900.2	Gene3D:1.20.1270.220	InterPro:IPR027353	InterPro:IPR038336	InterPro:NET_dom
InterPro:NET_sf	PANTHER:PTHR22880	PANTHER:PTHR22880:SF180	PFAM:PF17035	PFscan:PS51525	UniParc:UPI0002767746
UniProt:K4B7C2	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr2:-:37986936..37991975

Molecular Weight (calculated)

37142.8 Da

IEP (calculated)

4.641

GRAVY (calculated)

-0.536

Length

328 amino acids

Sequence
(BLAST)

001: MGRVASTECN RQGPDYFGLF ASEVAELISQ DEDFLPISDQ IFEKSGEVNG VVEEKNSSMN SYIAKEFRYT GGSASLFSDC FGAHVSNFGK ERLKLLLRQS
101: VVALSQEVDE ILDPVFSICQ LRSCLRYKES LLAVPGPVSN SDQGNHPQKK LKASPLSDSK REDLNISPSR GDTTNDVKKL EGEQVKDSLA KKDQNDGATP
201: EDGDVHNDLQ FLLQNDSAKV ESLIEKHYDE LVSTLGYMEE KLEELLDIVM SNCRLMTFPE KQHLRQLIRD LPPKNLDRVV QIFCRGKQVE RHSCSEVYVD
301: LENEDKATLW RLYFYIETVE NAKRLCEV

Best Arabidopsis Sequence Match ( AT5G40600.2 )
(BLAST)

001: MSKRAAEEMT PSLESNRTGP DFFGYYRAQV EELLSQEEKI PHHNHVDAKK SSAEIIGAEL SDVKQEKLNA LLRQCVLNSI PEVDEMQSRV DSMYLMSQLS
101: NKKRSTLPTN AESVIPEDPR CKEVEDDLRL LMKSDPSLVK EIVGKHSSDL LARLNERQQH LEKLLDNVVT TCRPMSRGEK RDLQKSIKEL PAKNLERVAG
201: IIKNHYVALG KEMPDDVFVI NMEEEDKVLL WRLHYFVVAV QSARKLAS

Arabidopsis Description

unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27420.1); Has 18 /.../st hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). [Source:TAIR;Acc:AT5G40600]
SUBAcon: [mitochondrion,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.