Factsheet for Solyc08g006660.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096000.2.1
Solyc03g115070.1.1
Solyc04g006990.2.1
Solyc05g009880.2.1
Solyc05g052510.2.1
Solyc05g053220.2.1
Solyc05g053730.2.1
Solyc06g051310.2.1
Solyc06g082360.2.1
Solyc07g056360.1.1
Solyc08g006660.1.1
Solyc08g075440.2.1
Solyc09g065820.2.1
Solyc10g080400.1.1
Solyc11g013370.1.1
Solyc11g072320.1.1
Solyc11g072390.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24840.1	Solyc08g075440.2.1	AT1G31780.1	21798944
AT4G24840.1	Solyc05g053220.2.1	AT1G54770.1	21798944
AT4G24840.1	Solyc06g082360.2.1	AT2G30260.1	21798944
AT4G24840.1	Solyc10g080400.1.1	AT2G42260.1	21798944
AT4G24840.1	Solyc07g056360.1.1	AT2G42870.1	21798944
AT4G24840.1	Solyc11g072320.1.1	AT2G43650.1	21798944
AT4G24840.1	Solyc11g072390.1.1	AT2G43650.1	21798944
AT4G24840.1	Solyc11g013370.1.1	AT2G44950.1	21798944
AT4G24840.1	Solyc03g096000.2.1	AT3G08530.1	21798944
AT4G24840.1	Solyc05g052510.2.1	AT3G08530.1	21798944
AT4G24840.1	Solyc06g051310.2.1	AT3G08530.1	21798944
AT4G24840.1	Solyc04g006990.2.1	AT3G25710.1	21798944
AT4G24840.1	Solyc05g009880.2.1	AT3G25710.1	21798944
AT4G24840.1	Solyc09g065820.2.1	AT4G02590.1	21798944
AT4G24840.1	Solyc08g006660.1.1	AT4G24840.1	21798944
AT4G24840.1	Solyc05g053730.2.1	AT5G49210.1	21798944
AT4G24840.1	Solyc03g115070.1.1	AT5G61010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400067640	Potato	cytosol, plastid	97.71	97.71
VIT_17s0000g01560.t01	Wine grape	cytosol	69.0	68.18
KRH03947	Soybean	cytosol	67.92	66.75
KRH57220	Soybean	cytosol	66.98	65.83
AT4G24840.1	Thale cress	cytosol, plastid	64.96	63.76
CDX92658	Canola	plastid	64.96	63.67
CDY03412	Canola	plastid	64.56	63.03
CDY11039	Canola	cytosol	64.29	63.01
CDY34317	Canola	cytosol, plastid	64.02	62.66
Bra013840.1-P	Field mustard	mitochondrion	55.12	62.44
GSMUA_AchrUn_...	Banana	cytosol	61.99	61.33
CDX70811	Canola	plastid	59.3	60.69
CDY51233	Canola	cytosol, plastid	58.89	60.36
Bra006453.1-P	Field mustard	cytosol, plastid	58.76	60.22
Zm00001d012851_P001	Maize	cytosol	59.43	59.68
OQU90613	Sorghum	cytosol	59.43	58.96
HORVU5Hr1G121540.1	Barley	cytosol	58.49	58.73
Os03t0849600-01	Rice	cytosol	59.57	58.62
TraesCS5B01G549700.1	Wheat	cytosol	59.84	58.12
TraesCS5D01G536700.1	Wheat	cytosol	59.7	57.98
TraesCS4A01G335400.1	Wheat	cytosol	59.84	57.89
Bra019205.1-P	Field mustard	cytosol	64.96	56.57
Zm00001d034842_P001	Maize	cytosol	59.3	55.35

Protein Annotations

MapMan:22.6.2.2	InterPro:COG2	InterPro:COG_complex_COG2_C	InterPro:COG_su2_N	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005794
GO:GO:0006810	GO:GO:0006891	GO:GO:0007030	GO:GO:0008150	GO:GO:0008565	GO:GO:0009987
GO:GO:0015031	GO:GO:0016020	GO:GO:0016043	GO:GO:0017119	UniProt:K4CIF4	PFAM:PF06148
PFAM:PF12022	PANTHER:PTHR12961	EnsemblPlantsGene:Solyc08g006660.1	EnsemblPlants:Solyc08g006660.1.1	UniParc:UPI000276C053	SEG:seg

Description

No Description!

Coordinates

chr8:+:1243949..1246177

Molecular Weight (calculated)

83068.3 Da

IEP (calculated)

5.392

GRAVY (calculated)

-0.199

Length

742 amino acids

Sequence
(BLAST)

001: MQDLQSLPPP SPQSTHAPPR SATDLFGDPT DPNPPQWLNP TLFQSQDFDP ESYISDLRTF VPLETLRSEL RSHFTSLQRD LVDLINRDYA DFVSLSTKLT
101: DVDAAVVRMR APLFEIREKI DGFRNAVEGS LAALQNRLKQ RADAVEAREV LELLLDTFHV VSKVEKLIKE LPSGQTDYVE SGSNLRETQS MLLERIASEM
201: NRLKFYISHA QNMPFIENME KRIQNASSLL DTSLGHCLVD GLEYRDANAI YNCLRAYAAI DNTKNAEETF RSTIVGPLIQ KVIPQNPSGV VGGSSGNELE
301: EDYVKIKKYI EDDCKFLLDI SSIENSGLHV SSFLANSILK EVHYAIQKGK PVVFSPGRPT VFLKNYKASL NFLAHLEGYC PSRSEVVKFR SEAAYIEFMK
401: QWNVGVYFSL RFQEIAGALD SALSVAGLVP VASDQRKPQD LILKQSISLL ECLRSCWRDD VLVLSCSDRF LRLSLQLMSR FSSWLSAGLA ARKAGNVGSN
501: PGFEWAISAV PDDLVYIIHD LNRLGEEVCG DYLEHILELL KSCPAEVCDF VNQSILQGGK SLKGLLPIVM SAIIETIVEK CVEDLRQLKG ITATYRMTNK
601: PLPVRHSPYV SGVLRPLKEF LEGERAATCL NNETRNELLQ GAALEITQRY YDLTSELVNM SRRTESSLQK LRLGAQRRAG ASSDVSDHNL SETDKICMQL
701: FLDIQEYARS LSLLGVDAAS IPPYQSLWQC VAPAERKNTI SF

Best Arabidopsis Sequence Match ( AT4G24840.1 )
(BLAST)

001: MSDLVATSPS PSSAPRSATD FFSDPYDSHP LWFKPSLFLS PNFDSESYIS ELRTFVPFDT LRSELRSHLA SLNRELVDLI NRDYADFVNL STKLVDIDAA
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV

Arabidopsis Description

FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterP /.../009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G24840]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.