Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- cytosol 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34317 | Canola | cytosol, plastid | 97.63 | 97.89 |
| CDX92658 | Canola | plastid | 91.45 | 91.81 |
| CDY11039 | Canola | cytosol | 90.79 | 91.15 |
| AT4G24840.1 | Thale cress | cytosol, plastid | 86.32 | 86.77 |
| CDY51233 | Canola | cytosol, plastid | 72.37 | 75.97 |
| CDX70811 | Canola | plastid | 71.58 | 75.03 |
| KRH03947 | Soybean | cytosol | 67.63 | 68.08 |
| VIT_17s0000g01560.t01 | Wine grape | cytosol | 66.58 | 67.38 |
| KRH57220 | Soybean | cytosol | 66.18 | 66.62 |
| PGSC0003DMT400067640 | Potato | cytosol, plastid | 63.16 | 64.69 |
| Solyc08g006660.1.1 | Tomato | plastid | 63.03 | 64.56 |
| GSMUA_AchrUn_... | Banana | cytosol | 58.29 | 59.07 |
| OQU90613 | Sorghum | cytosol | 56.45 | 57.35 |
| Zm00001d012851_P001 | Maize | cytosol | 55.53 | 57.1 |
| Os03t0849600-01 | Rice | cytosol | 55.66 | 56.1 |
| HORVU5Hr1G121540.1 | Barley | cytosol | 53.95 | 55.48 |
| TraesCS5B01G549700.1 | Wheat | cytosol | 55.39 | 55.1 |
| TraesCS5D01G536700.1 | Wheat | cytosol | 55.26 | 54.97 |
| TraesCS4A01G335400.1 | Wheat | cytosol | 55.39 | 54.89 |
| Zm00001d034842_P001 | Maize | cytosol | 56.05 | 53.58 |
Protein Annotations
| EnsemblPlants:CDY03412 | EnsemblPlantsGene:GSBRNA2T00116058001 | GO:A0A078EQQ9 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0007030 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 | InterPro:COG2 |
| InterPro:COG_complex_COG2_C | InterPro:COG_su2_N | ncoils:Coil | PANTHER:PTHR12961 | PFAM:PF06148 | PFAM:PF12022 |
| ProteinID:CDY03412 | ProteinID:CDY03412.1 | SEG:seg | UniParc:UPI0004EECF45 | MapMan:22.6.2.2 | : |
Description
BnaC01g16700D
Coordinates
chrLK031943:+:305920..310200
Molecular Weight (calculated)
84954.1 Da
IEP (calculated)
6.039
GRAVY (calculated)
-0.167
Length
760 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDLVATSPS PSPSSAPRSA SDFFSDPYDS HPLWFKPSLF LSPVFDSESY ISELRTFVPF DTLRSELRSH LASLNRELVD LINRDYADFV SLSTKLVDID
101: EAVVRMRAPL LGLREKIAAF RGSVEAALFA LRSGLQQRSD AASAREVLEL LLDTFHVVSK VEKLIKVLPS APSDWQKEDG GVSLRSSVNV ENSTQQDGTT
201: MRETQSMLLE RIASEMNRLK FYMAHAQNLP FVENMEKRIQ SANVLLDASL GHSFIDGLNN SDTSVLYNCL RAYAAIDNTK SAEEIFRSTI VAPFIHKIVA
301: LETSTDAAGS SGDELENDYK QIKHFIAKDC KMLLEISSTD KSGLHVFDFL ANSILKEVLS AIQKVKPGAF SPGRPTEFLK NYKASLDFLA YLEGYCPSRT
401: AVTKFRTEAV YIEFMKQWNV GVYFSLRFQE IAGALDSALT SPSLVFIQDS DLDKRSSPNL ILRQSATLLE SLRSCWKEDV LVFSAADKFL RLTLQLLSRY
501: CIWVSSSLHT RRGNASPSPG CDWAVSATTE DFVYVIHDLN DLVSEVCGDY LGHISRHLSS CSTEVLDVVR TSMLQGGDKL KEVLPLLTNT IIEIIVDKSV
601: EDLRQVRGIT TTYRMTNKPP PVRHSPYVVG ILRHVKAFLE GDKATHYLTQ ETREEILLRT VTDITRRYYE SADEVVSLAR RTESSLQQFR RKAQKRAGAA
701: SGVSDDNVSE TDKMCMQLFL DAQEYGRNIS ALGLKPADIP VYCSLWQCVA PADRQNTISV
101: EAVVRMRAPL LGLREKIAAF RGSVEAALFA LRSGLQQRSD AASAREVLEL LLDTFHVVSK VEKLIKVLPS APSDWQKEDG GVSLRSSVNV ENSTQQDGTT
201: MRETQSMLLE RIASEMNRLK FYMAHAQNLP FVENMEKRIQ SANVLLDASL GHSFIDGLNN SDTSVLYNCL RAYAAIDNTK SAEEIFRSTI VAPFIHKIVA
301: LETSTDAAGS SGDELENDYK QIKHFIAKDC KMLLEISSTD KSGLHVFDFL ANSILKEVLS AIQKVKPGAF SPGRPTEFLK NYKASLDFLA YLEGYCPSRT
401: AVTKFRTEAV YIEFMKQWNV GVYFSLRFQE IAGALDSALT SPSLVFIQDS DLDKRSSPNL ILRQSATLLE SLRSCWKEDV LVFSAADKFL RLTLQLLSRY
501: CIWVSSSLHT RRGNASPSPG CDWAVSATTE DFVYVIHDLN DLVSEVCGDY LGHISRHLSS CSTEVLDVVR TSMLQGGDKL KEVLPLLTNT IIEIIVDKSV
601: EDLRQVRGIT TTYRMTNKPP PVRHSPYVVG ILRHVKAFLE GDKATHYLTQ ETREEILLRT VTDITRRYYE SADEVVSLAR RTESSLQQFR RKAQKRAGAA
701: SGVSDDNVSE TDKMCMQLFL DAQEYGRNIS ALGLKPADIP VYCSLWQCVA PADRQNTISV
001: MSDLVATSPS PSSAPRSATD FFSDPYDSHP LWFKPSLFLS PNFDSESYIS ELRTFVPFDT LRSELRSHLA SLNRELVDLI NRDYADFVNL STKLVDIDAA
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV
101: VVRMRAPLLE LREKITGFRG SVEAALFALR NGLQQRSDAA AAREVLELLL DTFHVVSKVE KLIKVLPSTP SDWQNEDANS MGRSSMNDEN STQQDGTTMR
201: ETQSMLLERI ASEMNRLKFY MAHAQNLPFI ENMEKRIQSA SVLLDASLGH CFIDGLNNSD TSVLYNCLRA YAAIDNTNAA EEIFRTTIVA PFIQKIITHE
301: TTTNAAGTSE DELENDYKQI KHFIAKDCKM LLEISSTDKS GLHVFDFLAN SILKEVLWAI QKVKPGAFSP GRPTEFLKNY KASLDFLAYL EGYCPSRSAV
401: TKFRAEAICV EFMKQWNVGV YFSLRFQEIA GALDSALTSP SLVFIQDSDK ESSLNLILRQ SDTLLECLRS CWKEDVLVFS AADKFLRLTL QLLSRYSFWV
501: SSALNNRKSN ASPSPGCEWA VSATAEDFVY VIHDVNCLVS EVCGDYLGHI SQYLSSSSTE VLDVVRISIE QGGVSLEKVL PLLTKTIIDV IVDKSVEDLR
601: QLRGITATFR MTNKPLPVRH SPYVVGLLRP VKAFLEGDKA RNYLTQKTKE ELLHGSVSEI TRRYYELAAD VVSVARKTQS SLQKLRQNAQ RRGGAASGVS
701: DQNVSETDKM CMQLFLDIQE YGRNVSALGL KPADIPEYCS FWQCVAPADR QNSISV
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport, Golgi organization; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: COG complex component, COG2 (InterP /.../009316); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT4G24840]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.