CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70438
CDX71689
CDX73866
CDX76980
CDX78461
CDX90483
CDX91181
CDY01038
CDY08511
CDY09638
CDY32642
CDY35358
CDY35590
CDY38850
CDY42967
CDY56601
CDY67814

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G49210.1	CDX76980	AT2G25490.1	21798944
AT5G49210.1	CDY35358	AT2G25490.1	21798944
AT5G49210.1	CDX73866	AT3G11590.1	21798944
AT5G49210.1	CDY01038	AT3G11590.1	21798944
AT5G49210.1	CDY08511	AT3G11590.1	21798944
AT5G49210.1	CDY56601	AT3G11590.1	21798944
AT5G49210.1	CDX90483	AT4G17220.1	21798944
AT5G49210.1	CDY09638	AT4G17220.1	21798944
AT5G49210.1	CDY35590	AT4G17220.1	21798944
AT5G49210.1	CDY42967	AT4G17220.1	21798944
AT5G49210.1	CDX70438	AT5G11980.1	21798944
AT5G49210.1	CDX78461	AT5G11980.1	21798944
AT5G49210.1	CDX91181	AT5G11980.1	21798944
AT5G49210.1	CDY67814	AT5G11980.1	21798944
AT5G49210.1	CDX71689	AT5G51110.1	21798944
AT5G49210.1	CDY32642	AT5G51110.1	21798944
AT5G49210.1	CDY38850	AT5G51110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86248	Canola	mitochondrion	95.34	95.34
CDY33924	Canola	mitochondrion, nucleus	86.53	84.77
AT5G49210.1	Thale cress	mitochondrion	77.2	76.41
CDY70877	Canola	mitochondrion	85.49	73.01
Solyc05g053730.2.1	Tomato	nucleus	53.37	51.5
KRH01771	Soybean	mitochondrion	46.63	51.43
PGSC0003DMT400040750	Potato	mitochondrion	52.85	51.0
KRH46915	Soybean	mitochondrion	46.11	50.0
VIT_05s0029g01220.t01	Wine grape	mitochondrion	47.15	46.43
Os11t0148600-01	Rice	mitochondrion	40.93	42.47
Zm00001d004927_P001	Maize	mitochondrion	40.41	41.94
OQU82869	Sorghum	mitochondrion	39.38	41.76
TraesCS4B01G134100.1	Wheat	mitochondrion	40.41	40.84
TraesCS4A01G184600.1	Wheat	mitochondrion	39.9	40.31
TraesCS4D01G129000.1	Wheat	mitochondrion	39.9	40.31
GSMUA_Achr1P11210_001	Banana	mitochondrion	39.9	36.15
HORVU4Hr1G025670.1	Barley	mitochondrion	39.9	35.65
Os12t0146400-01	Rice	mitochondrion	18.65	33.96
KXG38100	Sorghum	plastid	27.46	23.14

Protein Annotations

EnsemblPlants:CDY56435	EnsemblPlantsGene:GSBRNA2T00019588001	ncoils:Coil	PANTHER:PTHR36402	ProteinID:CDY56435	ProteinID:CDY56435.1
SEG:seg	UniParc:UPI0004EBB235	UniProt:A0A078J0H8	MapMan:35.2	:	:

Description

BnaC07g49280DBnaC07g49280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J0H8]

Coordinates

chrLK033490:+:7261..9100

Molecular Weight (calculated)

23028.7 Da

IEP (calculated)

10.353

GRAVY (calculated)

-1.073

Length

193 amino acids

Sequence
(BLAST)

001: MSLCNQLSRL VKQSPLTKQS LRSFSAEAAT HHRHHQETHS FLEPESYIGS WEAPKDPKDA ERMLAQLRRD YAKKVSLYRK DYVHEIEMLR VEKQRKDEAR
101: LVAERAANEE RRRLKAEAAK VRAEERKIFQ DEFRKTLMKE RAEKLEFWRM TGLKREDKKK ARKKLLHEQS SLWIEPKELE KKITEALVDS TTL

Best Arabidopsis Sequence Match ( AT5G49210.1 )
(BLAST)

001: MAFCNKLSRF VRRQSENASM IGSLRSFSAD ATHHRFHQET HNFLEPEYYI GSWEAPSDPK DAERKLAQLR RDYAKKVRVY RKEYIHEIEM LRVEKQRKDE
101: ARLLAERAAN EERRLLKAEA AKVRAEERKI ADEEFRQTLI KERAEKLEMW KMMGQKREEK IKEREKLLRE QSSLWIEQKE LERKITEALV DNVVL

Arabidopsis Description

AT5g49210/K21P3_8 [Source:UniProtKB/TrEMBL;Acc:Q945P2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.