CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX77280
CDX80590
CDX82228
CDX83250
CDX85931
CDX87650
CDX90932
CDX93698
CDX93699
CDX96963
CDY06379
CDY13521
CDY14922
CDY16470
CDY18013
CDY19606
CDY21896
CDY22060
CDY27563
CDY32390
CDY38540
CDY39073
CDY40610
CDY40611
CDY46357
CDY60391

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	CDX96963	AT1G10230.1	12169662
AT2G25490.1	CDY14922	AT1G10230.1	12169662
AT2G25490.1	CDX68112	AT1G75950.1	12169662
AT2G25490.1	CDX73212	AT1G75950.1	12169662
AT2G25490.1	CDX80590	AT1G75950.1	12169662
AT2G25490.1	CDX85931	AT1G75950.1	12169662
AT2G25490.1	CDX87650	AT1G75950.1	12169662
AT2G25490.1	CDY13521	AT1G75950.1	12169662
AT2G25490.1	CDY39073	AT1G75950.1	12169662
AT2G25490.1	CDX68112	AT1G75950.1	14675533
AT2G25490.1	CDX73212	AT1G75950.1	14675533
AT2G25490.1	CDX80590	AT1G75950.1	14675533
AT2G25490.1	CDX85931	AT1G75950.1	14675533
AT2G25490.1	CDX87650	AT1G75950.1	14675533
AT2G25490.1	CDY13521	AT1G75950.1	14675533
AT2G25490.1	CDY39073	AT1G75950.1	14675533
AT2G25490.1	CDX68112	AT1G75950.1	14749489
AT2G25490.1	CDX73212	AT1G75950.1	14749489
AT2G25490.1	CDX80590	AT1G75950.1	14749489
AT2G25490.1	CDX85931	AT1G75950.1	14749489
AT2G25490.1	CDX87650	AT1G75950.1	14749489
AT2G25490.1	CDY13521	AT1G75950.1	14749489
AT2G25490.1	CDY39073	AT1G75950.1	14749489
AT2G25490.1	CDX83250	AT2G27050.1	14675533
AT2G25490.1	CDY38540	AT2G27050.1	14675533
AT2G25490.1	CDX82228	AT3G20770.1	14675532
AT2G25490.1	CDY06379	AT3G20770.1	14675532
AT2G25490.1	CDY19606	AT3G20770.1	14675532
AT2G25490.1	CDY27563	AT3G20770.1	14675532
AT2G25490.1	CDY32390	AT3G20770.1	14675532
AT2G25490.1	CDY60391	AT3G20770.1	14675532
AT2G25490.1	CDX82228	AT3G20770.1	14675533
AT2G25490.1	CDY06379	AT3G20770.1	14675533
AT2G25490.1	CDY19606	AT3G20770.1	14675533
AT2G25490.1	CDY27563	AT3G20770.1	14675533
AT2G25490.1	CDY32390	AT3G20770.1	14675533
AT2G25490.1	CDY60391	AT3G20770.1	14675533
AT2G25490.1	CDY46357	AT3G28715.1	21798944
AT2G25490.1	CDX77280	AT3G60010.1	12169662
AT2G25490.1	CDX93698	AT3G60010.1	12169662
AT2G25490.1	CDX93699	AT3G60010.1	12169662
AT2G25490.1	CDY16470	AT3G60010.1	12169662
AT2G25490.1	CDY40610	AT3G60010.1	12169662
AT2G25490.1	CDY40611	AT3G60010.1	12169662
AT2G25490.1	CDX90932	AT4G02570.1	14675533
AT2G25490.1	CDY18013	AT4G02570.1	14675533
AT2G25490.1	CDY21896	AT4G02570.1	14675533
AT2G25490.1	CDY22060	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35358	Canola	cytosol	96.49	92.78
AT2G25490.1	Thale cress	plastid	85.48	81.53
CDX87090	Canola	cytosol	58.1	56.49
KRH15886	Soybean	cytosol	60.43	56.21
CDX80503	Canola	cytosol	58.26	56.2
CDX88173	Canola	cytosol	58.26	56.11
CDY19807	Canola	cytosol	57.6	56.01
KRH05167	Soybean	cytosol	55.93	54.92
VIT_04s0008g05470.t01	Wine grape	cytosol	58.93	52.92
PGSC0003DMT400040977	Potato	nucleus	59.1	52.91
Solyc08g060810.2.1	Tomato	plastid	58.26	52.48
KRH61771	Soybean	cytosol	55.43	52.2
KRH52439	Soybean	cytosol, nucleus, peroxisome	55.59	52.19
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	21.04	47.37
GSMUA_Achr4P30680_001	Banana	cytosol	48.58	44.63
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	48.58	44.5
GSMUA_Achr6P05220_001	Banana	cytosol	48.25	44.19
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	48.75	43.71
PGSC0003DMT400042949	Potato	cytosol	40.23	43.66
Zm00001d015778_P001	Maize	cytosol	46.74	43.55
PGSC0003DMT400094835	Potato	cytosol	17.7	43.27
Solyc06g049010.1.1	Tomato	plastid	44.57	43.06
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	47.08	43.05
HORVU7Hr1G090240.1	Barley	cytosol	38.56	42.86
Zm00001d053642_P001	Maize	cytosol	46.24	42.55
PGSC0003DMT400089433	Potato	mitochondrion	32.39	42.27
HORVU6Hr1G038430.3	Barley	plastid	45.91	42.11
TraesCS6B01G210700.1	Wheat	cytosol	45.58	42.06
TraesCS6D01G169200.1	Wheat	cytosol	45.58	42.06
TraesCS6A01G181900.1	Wheat	cytosol	45.24	41.76
EER90022	Sorghum	cytosol, plastid	43.24	41.37
TraesCS7B01G278800.1	Wheat	cytosol	44.57	41.27
TraesCS7D01G373800.1	Wheat	cytosol	44.74	41.17
Os02t0200900-01	Rice	cytosol	45.24	41.06
TraesCS7A01G377500.1	Wheat	cytosol	44.24	40.83
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	45.24	40.57
Os06t0605900-01	Rice	cytosol	40.73	38.92
Solyc06g030620.1.1	Tomato	cytosol	13.02	38.81
Solyc06g030610.1.1	Tomato	cytosol	17.2	37.59
HORVU5Hr1G029670.1	Barley	mitochondrion	31.89	37.23
HORVU5Hr1G000950.4	Barley	plastid	27.71	37.14
Zm00001d036880_P003	Maize	cytosol	43.07	35.05
Zm00001d000408_P001	Maize	cytosol	43.24	34.86
CDX88336	Canola	cytosol	12.52	23.15
CDX88014	Canola	cytosol	15.53	22.96
CDX79184	Canola	cytosol	13.69	22.84
CDX68067	Canola	cytosol	13.52	22.56
CDX87549	Canola	cytosol	13.36	22.54
CDY09760	Canola	cytosol	23.37	22.33
CDX90588	Canola	cytosol	23.37	22.26
CDX96592	Canola	cytosol	13.19	21.82
CDY67973	Canola	plasma membrane	13.02	21.55
CDX71945	Canola	cytosol	12.69	21.53
CDY06032	Canola	cytosol	12.69	21.53
CDY46953	Canola	cytosol	14.69	21.41
CDY40798	Canola	cytosol	14.52	21.17
CDY25663	Canola	plastid	17.53	20.43
CDY19741	Canola	cytosol	21.04	20.42
CDY11182	Canola	cytosol, endoplasmic reticulum, nucleus	22.87	20.27
CDY28039	Canola	cytosol	13.19	20.26
CDY43846	Canola	plastid	17.2	20.04
CDX88253	Canola	cytosol	21.37	20.0
CDX80753	Canola	endoplasmic reticulum	22.37	19.82
CDY35942	Canola	cytosol	13.02	19.75
CDX83114	Canola	cytosol	16.36	19.72
CDY53337	Canola	cytosol	21.04	19.72
CDY58588	Canola	extracellular	4.34	19.7
CDX80608	Canola	cytosol	21.04	19.69
CDX68575	Canola	cytosol	16.53	19.37
CDY58589	Canola	extracellular	4.17	19.08
CDY18646	Canola	cytosol	16.53	18.89
CDX81326	Canola	cytosol	16.36	18.7
CDY45764	Canola	cytosol, peroxisome, plastid	15.69	16.12
CDY29091	Canola	plastid	3.01	10.4
CDY12824	Canola	nucleus	17.03	9.36
CDY01426	Canola	cytosol	16.86	9.33

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	EnsemblPlants:CDX76980	ProteinID:CDX76980
ProteinID:CDX76980.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00127533001	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44327	PANTHER:PTHR44327:SF1	SMART:SM00256
SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI0004EDCC82	SEG:seg	:

Description

BnaC04g37750D

Coordinates

chrLK031809:-:115406..118393

Molecular Weight (calculated)

63554.1 Da

IEP (calculated)

7.605

GRAVY (calculated)

0.181

Length

599 amino acids

Sequence
(BLAST)

001: MSQIYSFAGE SEFYRRGSNP KEANIFLSLG SLVDCYYPPC KRSRVVAAPS LFSAFEEEKP VSIDVLPDEC LFEIFRRLPG PQERTACAFV SKHWLTLVTS
101: IRQSELDVVD HKTEDDSEGC LSRSLDGKKA TDVRLAAIAV GTAGRGGLGK LSVRGSDKVS DLGLRSIGRS CPSLGSLSLC SLSAVTDIGL LEIAEGCPQL
201: EKLDLSRCPA ITDKCLVAIA KSCPNLSELT LEACSSIGDE GLQAVARSCS KLKSVSIKNC PLVRDQGIAA LLSNTTCSLT KLKLQMVNVT DVSLAVVGHY
301: GFSVTELVLA GLSHVTEKGF WVMGNGIGLQ KLNSLTITAC QGVTDAGLES VGKGCPNMKK ALISKSPLLS DNGLVSFAKG SLSLESIQLE ECHRVTQFGF
401: FGSLLNCGAK LKAFSMVNCL GIRDLATGLP ASSHRSGLRS LSVRNCPGFG DANLAALGKL CPQLEDIELC GLKGVTESGF LHLLQNSLVK VNFSGCSGLT
501: DRVVSAISAR NANCQILSDL DLSKCSVSDF GIQALASSEK LKLQILSMAG CAMVTDKSLP SIVKLGSTLL GLNLQQCRSV SCSTVDFLLE RLYKCDILS

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.