Factsheet for Solyc06g049010.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g009170.2.1
Solyc01g099290.2.1
Solyc06g073720.1.1
Solyc06g073730.1.1
Solyc10g081530.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G25490.1	Solyc01g009170.2.1	AT2G27050.1	14675533
AT2G25490.1	Solyc06g073720.1.1	AT2G27050.1	14675533
AT2G25490.1	Solyc06g073730.1.1	AT2G27050.1	14675533
AT2G25490.1	Solyc01g009170.2.1	AT3G20770.1	14675532
AT2G25490.1	Solyc06g073720.1.1	AT3G20770.1	14675532
AT2G25490.1	Solyc06g073730.1.1	AT3G20770.1	14675532
AT2G25490.1	Solyc01g009170.2.1	AT3G20770.1	14675533
AT2G25490.1	Solyc06g073720.1.1	AT3G20770.1	14675533
AT2G25490.1	Solyc06g073730.1.1	AT3G20770.1	14675533
AT2G25490.1	Solyc10g081530.1.1	AT3G28715.1	21798944
AT2G25490.1	Solyc01g099290.2.1	AT4G02570.1	14675533
AT5G25350.1	Solyc01g009170.2.1	AT3G20770.1	14675532
AT5G25350.1	Solyc06g073720.1.1	AT3G20770.1	14675532
AT5G25350.1	Solyc06g073730.1.1	AT3G20770.1	14675532
AT5G25350.1	Solyc01g009170.2.1	AT3G20770.1	14675533
AT5G25350.1	Solyc06g073720.1.1	AT3G20770.1	14675533
AT5G25350.1	Solyc06g073730.1.1	AT3G20770.1	14675533
AT5G25350.1	Solyc01g099290.2.1	AT4G02570.1	14675533

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042949	Potato	cytosol	69.35	77.9
Solyc08g060810.2.1	Tomato	plastid	58.87	54.89
Solyc06g030610.1.1	Tomato	cytosol	22.74	51.46
Solyc06g030620.1.1	Tomato	cytosol	16.45	50.75
KRH15886	Soybean	cytosol	52.42	50.47
KRH05167	Soybean	cytosol	47.42	48.2
AT2G25490.1	Thale cress	plastid	48.06	47.45
VIT_04s0008g05470.t01	Wine grape	cytosol	50.97	47.38
KRH52439	Soybean	cytosol, nucleus, peroxisome	47.1	45.77
KRH61771	Soybean	cytosol	46.94	45.75
Solyc12g009560.1.1	Tomato	cytosol	46.94	45.68
Bra009835.1-P	Field mustard	cytosol	45.0	44.86
CDX88173	Canola	cytosol	45.0	44.86
AT5G25350.1	Thale cress	cytosol	45.0	44.78
CDY35358	Canola	cytosol	44.84	44.62
CDX76980	Canola	cytosol	43.06	44.57
Bra034254.1-P	Field mustard	cytosol	44.68	44.53
CDX80503	Canola	cytosol	44.19	44.12
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	45.32	43.84
Bra036542.1-P	Field mustard	cytosol	42.9	43.18
CDX87090	Canola	cytosol	42.9	43.18
CDY19807	Canola	cytosol	42.42	42.69
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	44.68	42.35
GSMUA_Achr6P05220_001	Banana	cytosol	44.03	41.74
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	43.23	40.12
GSMUA_Achr4P30680_001	Banana	cytosol	42.1	40.03
Zm00001d015778_P001	Maize	cytosol	40.81	39.35
TraesCS6A01G181900.1	Wheat	cytosol	41.13	39.29
HORVU6Hr1G038430.3	Barley	plastid	41.29	39.2
TraesCS6B01G210700.1	Wheat	cytosol	40.81	38.98
HORVU7Hr1G090240.1	Barley	cytosol	33.87	38.96
EES06473	Sorghum	cytosol, peroxisome, plasma membrane	41.13	38.93
Zm00001d053642_P001	Maize	cytosol	40.81	38.86
TraesCS6D01G169200.1	Wheat	cytosol	40.65	38.83
HORVU1Hr1G089690.1	Barley	cytosol, extracellular, mitochondrion	16.45	38.35
Os02t0200900-01	Rice	cytosol	40.48	38.03
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	40.81	37.87
EER90022	Sorghum	cytosol, plastid	38.23	37.86
TraesCS7A01G377500.1	Wheat	cytosol	38.71	36.98
TraesCS7B01G278800.1	Wheat	cytosol	38.55	36.94
TraesCS7D01G373800.1	Wheat	cytosol	38.71	36.87
Os06t0605900-01	Rice	cytosol	36.29	35.89
HORVU5Hr1G029670.1	Barley	mitochondrion	26.77	32.36
Zm00001d036880_P003	Maize	cytosol	37.58	31.66
Zm00001d000408_P001	Maize	cytosol	36.94	30.82
HORVU5Hr1G000950.4	Barley	plastid	21.94	30.43
Solyc06g005380.2.1	Tomato	cytosol	12.26	21.97
Solyc04g008980.2.1	Tomato	cytosol	14.84	21.9
Solyc06g054440.2.1	Tomato	mitochondrion	18.55	21.5
Solyc04g063380.2.1	Tomato	cytosol	12.58	21.43
Solyc10g076290.1.1	Tomato	cytosol	23.06	21.19
Solyc04g078490.1.1	Tomato	cytosol	18.23	21.16
Solyc03g044220.1.1	Tomato	cytosol	17.9	20.22
Solyc02g092990.1.1	Tomato	plastid	17.58	19.82
Solyc06g007680.1.1	Tomato	cytosol	12.74	19.75
Solyc01g099970.2.1	Tomato	extracellular	19.03	19.06

Protein Annotations

MapMan:11.5.2.6	MapMan:19.2.2.8.1.4.2	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	UniProt:K4C5E7	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF13516	PANTHER:PTHR44327	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
EnsemblPlantsGene:Solyc06g049010.1	EnsemblPlants:Solyc06g049010.1.1	UniParc:UPI0002766920	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:32265006..32267962

Molecular Weight (calculated)

67062.3 Da

IEP (calculated)

8.355

GRAVY (calculated)

0.255

Length

620 amino acids

Sequence
(BLAST)

001: MTSENGVFFA ASYPTSRQSS LFLSRGQNRN VNFPPRKRIC VTTASKNFEQ RNHPSIEILL DECLFKVFKH LPSGKERSVC ACVSKRWLTL LSSIRKDKIP
101: ESNGIEGKGS LVRSLVGREA TDVRLAAIAV GASNYKGLSK LSIGGDNTCH SVSDGGLKAI ARCCPTLRDL SLSNMAFVGN EGLSEIANGC HLLEKLYLFQ
201: CPKITDSSLL DIAKNCSHMT SLTIDSCFKI GNEVPKAVGL YCPKLKVIIL KNCPLIGDRG IEDLFLSAGH SLTEVELQAL HTSDISIKII SQHGTALTSL
301: DFGELRRVVV RDFWVMGIGQ CLHKLKALSI SACSGVNDLG LHVICKACPN LKLFCVRKSV VLSDNGLVAC IKDLVSLQHL RLEECHLITQ AGFFGILLNC
401: GKKLKTFSLV KCFGVNDLTN AIPSKAPCCN SLVSLTIRNC LGVGNATIAI ISRLCHRLTH IKLIGLLSIT DEGIFPLVKN CAANLVAVNL SGCVNITDIS
501: VSYIVNKCGK SLKYLLVDGC KNVTDATLVE IWNSCWTLNV LDVSKCGITD SGITTLSSAI QLQLQILSLS GCPLVSDNSL PFLLDLTQNL QGLNIQHCPN
601: ISSKTVDALV EINPRCDILS

Best Arabidopsis Sequence Match ( AT2G25490.1 )
(BLAST)

001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS

Arabidopsis Description

EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.