Factsheet for Solyc10g076290.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030966	Potato	cytosol, plasma membrane, plastid	95.26	96.69
VIT_08s0058g00700.t01	Wine grape	cytosol	73.63	74.96
KRH76059	Soybean	cytosol, nucleus, peroxisome	65.33	65.72
AT5G01720.1	Thale cress	vacuole	62.81	63.76
KRH65525	Soybean	cytosol, peroxisome, plastid	66.37	63.28
Bra005669.1-P	Field mustard	cytosol	60.74	61.38
CDY11182	Canola	cytosol, endoplasmic reticulum, nucleus	61.04	60.95
CDX80753	Canola	endoplasmic reticulum	59.85	59.76
GSMUA_Achr7P22290_001	Banana	cytosol	59.85	56.42
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	59.56	56.3
Os12t0108500-01	Rice	cytosol, plasma membrane, plastid	52.59	50.93
TraesCS5A01G150800.2	Wheat	mitochondrion	51.26	50.73
Zm00001d044622_P002	Maize	mitochondrion	52.89	50.71
TraesCS5B01G149400.1	Wheat	mitochondrion	51.11	50.59
HORVU5Hr1G047420.2	Barley	cytosol, mitochondrion, plastid	50.52	50.52
KXG22793	Sorghum	nucleus	52.0	50.43
EES07863	Sorghum	nucleus	51.26	50.07
TraesCS5D01G155900.1	Wheat	mitochondrion	51.11	49.78
Zm00001d005072_P003	Maize	mitochondrion	51.41	47.86
Os11t0108932-01	Rice	nucleus	20.59	44.55
Solyc01g099970.2.1	Tomato	extracellular	34.67	37.8
Solyc04g008980.2.1	Tomato	cytosol	18.22	29.29
Solyc06g054440.2.1	Tomato	mitochondrion	20.74	26.17
Solyc06g030610.1.1	Tomato	cytosol	10.52	25.91
Solyc06g005380.2.1	Tomato	cytosol	12.59	24.57
Solyc12g009560.1.1	Tomato	cytosol	22.67	24.02
Solyc08g060810.2.1	Tomato	plastid	23.26	23.61
Solyc06g030620.1.1	Tomato	cytosol	6.96	23.38
Solyc06g049010.1.1	Tomato	plastid	21.19	23.06
Solyc06g007680.1.1	Tomato	cytosol	13.63	23.0
Solyc07g008250.2.1	Tomato	cytosol, nucleus, peroxisome	21.48	22.62
Solyc04g063380.2.1	Tomato	cytosol	12.15	22.53
Solyc04g078490.1.1	Tomato	cytosol	16.59	20.97
Solyc03g044220.1.1	Tomato	cytosol	16.89	20.77
Solyc02g092990.1.1	Tomato	plastid	16.44	20.18

Protein Annotations

EnsemblPlants:Solyc10g076290.1.1	EnsemblPlantsGene:Solyc10g076290.1	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	ncoils:Coil
PANTHER:PTHR44309	PANTHER:PTHR44309:SF3	PFAM:PF13516	SEG:seg	SMART:SM00367	SUPFAM:SSF52047
UniParc:UPI0002769BFF	UniProt:K4D1X1	MapMan:35.1	:	:	:

Description

F-box/LRR-repeat protein 3 [Source:Projected from Arabidopsis thaliana (AT5G01720) UniProtKB/Swiss-Prot;Acc:Q8RWU5]

Coordinates

chr10:+:59224673..59229879

Molecular Weight (calculated)

73775.6 Da

IEP (calculated)

7.650

GRAVY (calculated)

0.189

Length

675 amino acids

Sequence
(BLAST)

001: MIPKSSILGT MKKQKPISET LFNPFDLLSE EIVFSVLDCL NDNPFDKKSF SLVCKSFYAI ESHHRKILKP FRSEHLTKVL SRYPQVTHLD LSLCPRITDG
101: SLRVIANFCK EMLRSINLSR SKSFTHVGLS NLVMNCGNLV EIDLSNATEL KDVSAAALAE AKNLEKLWLV RCKSLTDIGL GCIAVGCRKL RLLSLRWCLG
201: VGDLGVGLIA VKCKEIRSLD LSYLPITNEC LSSISKLQYL EELILEGCYG IDDDSLASLE QGCKSLEKLD MSSCQNVSHV GLSSLTSCAG CLRQLVLSYG
301: SPVTPAVADS LQKLSRLQCV KLDGCQVTCS GLMAIGNWCV SLRELSLSKC VGVTDEGLSS LVTKHKDLRK LDITCCRKIT YISISHITNS CASLTSLRME
401: SCTLVPREAF VLIGQRCQYL EELDLTDNEI DDEGLKTISK CASLSSLKLG ICLNITDQGL MHIGMCCSNL KELDLYRSAG ISDLGILAIS RGCIGLEMIN
501: IAYCNRITDS SFISISKCSK LNTLESRGCP LVTSLGLAAV AVGCKQLTTL DIKNCHNIDD AGMIPLAHFL TNLKQINLSY TSVTDVGLLS LASISGLQNM
601: TILHLKGLSP GGLGAALLAC GGLTKVKLQT SFKSLLPQPL LQHLESRGCV FQWREKPFQA EVDPIYWKIQ LDNLE

Best Arabidopsis Sequence Match ( AT5G01720.1 )
(BLAST)

001: MKKVKQIRVL KPFDLLSEEL VFIILDLISP NPSDLKSFSL TCKSFYQLES KHRGSLKPLR SDYLPRILTR YRNTTDLDLT FCPRVTDYAL SVVGCLSGPT
101: LRSLDLSRSG SFSAAGLLRL ALKCVNLVEI DLSNATEMRD ADAAVVAEAR SLERLKLGRC KMLTDMGIGC IAVGCKKLNT VSLKWCVGVG DLGVGLLAVK
201: CKDIRTLDLS YLPITGKCLH DILKLQHLEE LLLEGCFGVD DDSLKSLRHD CKSLKKLDAS SCQNLTHRGL TSLLSGAGYL QRLDLSHCSS VISLDFASSL
301: KKVSALQSIR LDGCSVTPDG LKAIGTLCNS LKEVSLSKCV SVTDEGLSSL VMKLKDLRKL DITCCRKLSR VSITQIANSC PLLVSLKMES CSLVSREAFW
401: LIGQKCRLLE ELDLTDNEID DEGLKSISSC LSLSSLKLGI CLNITDKGLS YIGMGCSNLR ELDLYRSVGI TDVGISTIAQ GCIHLETINI SYCQDITDKS
501: LVSLSKCSLL QTFESRGCPN ITSQGLAAIA VRCKRLAKVD LKKCPSINDA GLLALAHFSQ NLKQINVSDT AVTEVGLLSL ANIGCLQNIA VVNSSGLRPS
601: GVAAALLGCG GLRKAKLHAS LRSLLPLSLI HHLEARGCAF LWKDNTLQAE LDPKYWKQQL EEMAP

Arabidopsis Description

FBL3F-box/LRR-repeat protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU5]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.