CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11182	Canola	cytosol, endoplasmic reticulum, nucleus	96.89	96.89
AT5G01720.1	Thale cress	vacuole	85.06	86.47
VIT_08s0058g00700.t01	Wine grape	cytosol	62.43	63.65
KRH76059	Soybean	cytosol, nucleus, peroxisome	60.65	61.1
PGSC0003DMT400030966	Potato	cytosol, plasma membrane, plastid	59.32	60.3
Solyc10g076290.1.1	Tomato	cytosol	59.76	59.85
KRH65525	Soybean	cytosol, peroxisome, plastid	61.98	59.18
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	54.44	51.54
GSMUA_Achr7P22290_001	Banana	cytosol	53.4	50.42
KXG22793	Sorghum	nucleus	50.15	48.71
Zm00001d044622_P002	Maize	mitochondrion	50.15	48.15
TraesCS5A01G150800.2	Wheat	mitochondrion	48.52	48.09
EES07863	Sorghum	nucleus	48.96	47.9
TraesCS5B01G149400.1	Wheat	mitochondrion	47.93	47.51
Os12t0108500-01	Rice	cytosol, plasma membrane, plastid	48.82	47.35
HORVU5Hr1G047420.2	Barley	cytosol, mitochondrion, plastid	47.04	47.11
TraesCS5D01G155900.1	Wheat	mitochondrion	47.49	46.32
Zm00001d005072_P003	Maize	mitochondrion	49.26	45.93
Os11t0108932-01	Rice	nucleus	20.86	45.19
CDY53337	Canola	cytosol	35.5	37.56
CDX88253	Canola	cytosol	35.21	37.19
CDX80608	Canola	cytosol	35.06	37.03
CDY19741	Canola	cytosol	33.58	36.79
CDY46953	Canola	cytosol	16.42	27.01
CDY40798	Canola	cytosol	16.27	26.76
CDX88014	Canola	cytosol	15.98	26.67
CDX88336	Canola	cytosol	12.72	26.54
CDX71945	Canola	cytosol	13.31	25.5
CDY06032	Canola	cytosol	13.31	25.5
CDX90588	Canola	cytosol	23.67	25.44
CDY09760	Canola	cytosol	23.52	25.36
CDX87549	Canola	cytosol	13.31	25.35
CDY28039	Canola	cytosol	14.5	25.13
CDX79184	Canola	cytosol	13.17	24.79
CDX68067	Canola	cytosol	13.02	24.51
CDY35942	Canola	cytosol	14.2	24.3
CDX96592	Canola	cytosol	12.87	24.03
CDY67973	Canola	plasma membrane	12.72	23.76
CDY35358	Canola	cytosol	21.15	22.95
CDX88173	Canola	cytosol	21.01	22.83
CDX80503	Canola	cytosol	20.71	22.54
CDX76980	Canola	cytosol	19.82	22.37
CDX87090	Canola	cytosol	20.12	22.08
CDY19807	Canola	cytosol	19.97	21.92
CDY25663	Canola	plastid	16.42	21.6
CDY43846	Canola	plastid	16.27	21.4
CDY58588	Canola	extracellular	4.14	21.21
CDY58589	Canola	extracellular	3.99	20.61
CDX83114	Canola	cytosol	14.79	20.12
CDX68575	Canola	cytosol	14.94	19.77
CDX81326	Canola	cytosol	14.64	18.89
CDY45764	Canola	cytosol, peroxisome, plastid	16.12	18.7
CDY18646	Canola	cytosol	14.35	18.51
CDY29091	Canola	plastid	4.59	17.92
CDY01426	Canola	cytosol	15.53	9.7
CDY12824	Canola	nucleus	15.53	9.63

Protein Annotations

EnsemblPlants:CDX80753	EnsemblPlantsGene:GSBRNA2T00134125001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44309
PANTHER:PTHR44309:SF3	PFAM:PF13516	ProteinID:CDX80753	ProteinID:CDX80753.1	SEG:seg	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI0004EDDB2D	MapMan:35.1	:	:	:

Description

BnaC03g00070D

Coordinates

chrLK031823:+:64889..67867

Molecular Weight (calculated)

73619.1 Da

IEP (calculated)

8.203

GRAVY (calculated)

0.151

Length

676 amino acids

Sequence
(BLAST)

001: MKKAKQIQHM ISKPFDLLSE ELVFIILDLV AQSPSDLKSF SLTCKWFYQV EARHRRSLKP LRAEYLPRTL TRYRNTSDLD LTFCPRVTDY ALSVVGCLSG
101: PTLRSVDLSR SFSFSAAGLL RLAVKCVSLV EIDLSNATEM RDAAAAVVAE AKSLERLKLG RCKKLTDMGI GCIAVGCRKL KRVSLKWCVG VGDLGVGLLA
201: VKCKDLRSLD LSYLPITGKC LHDVLTLQHL EELLLQGCFG VDDDSLKSLT HHCNSLKNLD ASSCQNLTQR GLTSLLSGAR CLERLDLAHS SSVISLDFAS
301: SLNKVSSALQ SIRLDGCSVT CDGLKAIGTL CISLREVSLS KCVTVTDEGL SCLVMKLKDL RKLDITCCRK LTGVSITQVA NSCPLLVSLK MESCSLVSRD
401: AFWLLGHKCR LLEELDFTDN EIDDGGLISI SSCRSLSSLK LGICLNITDR GLSYIGMGCS NLRELDLYRS VGITDIGISS IAQGCCHLET INISYCKDIT
501: DKSLVSLSKC SMLQTFESRG CPHITCQGLA AIAVRCKRLT KLDLKKCPFI NDSGLLTLAH FSQGLKQISV SETGVTDVGL VSLANIGCLQ NIAAVNTRGL
601: SPSGVAAALV GCGGLRKAKL HASLRSLVPP SLITHMEARG CAFLWKDYNN HNNSNTLQAE LDPKYWKLQL EEDIEL

Best Arabidopsis Sequence Match ( AT5G01720.1 )
(BLAST)

001: MKKVKQIRVL KPFDLLSEEL VFIILDLISP NPSDLKSFSL TCKSFYQLES KHRGSLKPLR SDYLPRILTR YRNTTDLDLT FCPRVTDYAL SVVGCLSGPT
101: LRSLDLSRSG SFSAAGLLRL ALKCVNLVEI DLSNATEMRD ADAAVVAEAR SLERLKLGRC KMLTDMGIGC IAVGCKKLNT VSLKWCVGVG DLGVGLLAVK
201: CKDIRTLDLS YLPITGKCLH DILKLQHLEE LLLEGCFGVD DDSLKSLRHD CKSLKKLDAS SCQNLTHRGL TSLLSGAGYL QRLDLSHCSS VISLDFASSL
301: KKVSALQSIR LDGCSVTPDG LKAIGTLCNS LKEVSLSKCV SVTDEGLSSL VMKLKDLRKL DITCCRKLSR VSITQIANSC PLLVSLKMES CSLVSREAFW
401: LIGQKCRLLE ELDLTDNEID DEGLKSISSC LSLSSLKLGI CLNITDKGLS YIGMGCSNLR ELDLYRSVGI TDVGISTIAQ GCIHLETINI SYCQDITDKS
501: LVSLSKCSLL QTFESRGCPN ITSQGLAAIA VRCKRLAKVD LKKCPSINDA GLLALAHFSQ NLKQINVSDT AVTEVGLLSL ANIGCLQNIA VVNSSGLRPS
601: GVAAALLGCG GLRKAKLHAS LRSLLPLSLI HHLEARGCAF LWKDNTLQAE LDPKYWKQQL EEMAP

Arabidopsis Description

FBL3F-box/LRR-repeat protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU5]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.