Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06032 | Canola | cytosol | 97.73 | 97.73 |
| AT3G58530.1 | Thale cress | cytosol | 87.82 | 87.82 |
| PGSC0003DMT400074998 | Potato | cytosol | 68.27 | 69.65 |
| Solyc06g005380.2.1 | Tomato | cytosol | 67.71 | 69.08 |
| VIT_08s0007g07030.t01 | Wine grape | cytosol | 67.99 | 68.57 |
| EES04933 | Sorghum | cytosol | 62.89 | 63.61 |
| KRH38032 | Soybean | cytosol | 67.14 | 62.7 |
| GSMUA_Achr2P17760_001 | Banana | cytosol | 62.32 | 62.15 |
| TraesCS3D01G067600.2 | Wheat | cytosol | 60.34 | 60.86 |
| TraesCS3B01G080300.1 | Wheat | cytosol | 59.77 | 60.11 |
| TraesCS3A01G067800.1 | Wheat | cytosol | 59.77 | 60.11 |
| Os02t0281150-01 | Rice | cytosol | 60.62 | 60.11 |
| HORVU3Hr1G012530.12 | Barley | cytosol | 59.49 | 59.83 |
| Zm00001d015974_P002 | Maize | cytosol | 59.77 | 58.94 |
| CDX88336 | Canola | cytosol | 17.56 | 19.14 |
| CDX87549 | Canola | cytosol | 18.41 | 18.31 |
| CDX68067 | Canola | cytosol | 18.41 | 18.11 |
| CDX79184 | Canola | cytosol | 18.41 | 18.11 |
| CDY58589 | Canola | extracellular | 6.52 | 17.56 |
| CDY58588 | Canola | extracellular | 6.52 | 17.42 |
| CDX96592 | Canola | cytosol | 17.85 | 17.4 |
| CDX88014 | Canola | cytosol | 19.83 | 17.28 |
| CDY67973 | Canola | plasma membrane | 17.56 | 17.13 |
| CDY46953 | Canola | cytosol | 19.26 | 16.55 |
| CDY40798 | Canola | cytosol | 19.26 | 16.55 |
| CDY19741 | Canola | cytosol | 26.06 | 14.91 |
| CDX80608 | Canola | cytosol | 26.06 | 14.38 |
| CDX88253 | Canola | cytosol | 25.78 | 14.22 |
| CDY53337 | Canola | cytosol | 25.5 | 14.08 |
| CDY09760 | Canola | cytosol | 23.8 | 13.4 |
| CDX90588 | Canola | cytosol | 23.8 | 13.35 |
| CDY35358 | Canola | cytosol | 23.51 | 13.32 |
| CDX80753 | Canola | endoplasmic reticulum | 25.5 | 13.31 |
| CDX87090 | Canola | cytosol | 23.23 | 13.31 |
| CDX88173 | Canola | cytosol | 23.23 | 13.18 |
| CDY19807 | Canola | cytosol | 22.95 | 13.15 |
| CDX83114 | Canola | cytosol | 18.41 | 13.08 |
| CDX80503 | Canola | cytosol | 22.95 | 13.04 |
| CDY11182 | Canola | cytosol, endoplasmic reticulum, nucleus | 24.93 | 13.02 |
| CDY18646 | Canola | cytosol | 19.26 | 12.98 |
| CDX81326 | Canola | cytosol | 19.26 | 12.98 |
| CDX68575 | Canola | cytosol | 18.7 | 12.92 |
| CDY43846 | Canola | plastid | 18.7 | 12.84 |
| CDY25663 | Canola | plastid | 18.7 | 12.84 |
| CDX76980 | Canola | cytosol | 21.53 | 12.69 |
| CDY29091 | Canola | plastid | 5.95 | 12.14 |
| CDY45764 | Canola | cytosol, peroxisome, plastid | 19.83 | 12.01 |
| CDY28039 | Canola | cytosol | 11.9 | 10.77 |
| CDY35942 | Canola | cytosol | 11.9 | 10.63 |
| CDY01426 | Canola | cytosol | 19.26 | 6.28 |
| CDY12824 | Canola | nucleus | 19.26 | 6.24 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | EnsemblPlants:CDX71945 | ProteinID:CDX71945 | ProteinID:CDX71945.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00155702001 | InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp | PFAM:PF13516 | PANTHER:PTHR44001 | PANTHER:PTHR44001:SF1 | SMART:SM00367 |
| SUPFAM:SSF52047 | UniParc:UPI0004EDCB9C | SEG:seg | : | : | : |
Description
BnaC08g29290D
Coordinates
chrLK031795:-:1432129..1434795
Molecular Weight (calculated)
39795.5 Da
IEP (calculated)
7.130
GRAVY (calculated)
0.036
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MESKKVMEEE EEMWRREIVT SVMRIVSTRL PQRDLISLLL VSPWLYRTLV SYPSIWLNID LRERTNAGDR LLAALSLPRY RQVKHINLEF SQGVEDSHLQ
101: LVKSQCHDAL SSLECLNLNG CQKISDSGIE AITSICPKLK VISIYWNVRV TDDCIRHLVK NCRNIIDLNL SGCKSITDKG MQLVAESYQD LESLNITRCV
201: KITDDGLLHV LHKCSSLQTL NLYALSGFTD EAYKKISLLA ELRFLDLCGA QNLSDEGLGH IAKCNKLESL NLTWCVRITD AGVITIANSC TSLEFLSLFG
301: IVGVTDRCLE ALSHTCSATL TTLDVNGCIG IKRRSREELL QMFPRLICFK VHS
101: LVKSQCHDAL SSLECLNLNG CQKISDSGIE AITSICPKLK VISIYWNVRV TDDCIRHLVK NCRNIIDLNL SGCKSITDKG MQLVAESYQD LESLNITRCV
201: KITDDGLLHV LHKCSSLQTL NLYALSGFTD EAYKKISLLA ELRFLDLCGA QNLSDEGLGH IAKCNKLESL NLTWCVRITD AGVITIANSC TSLEFLSLFG
301: IVGVTDRCLE ALSHTCSATL TTLDVNGCIG IKRRSREELL QMFPRLICFK VHS
001: MEAKKVTEEE EETWRREIVT SVMRLVSTRL PQTDLISLLL VSPWLYRTLI SYPSIWLTIN LREMTNAGDR LLAALSLPRY RQVKHINLEF AQGVVDSHLK
101: LVKTECPDAL LSLEWLNLNV CQKISDNGIE AITSICPKLK VFSIYWNVRV TDAGIRNLVK NCRHITDLNL SGCKSLTDKS MQLVAESYPD LESLNITRCV
201: KITDDGLLQV LQKCFSLQTL NLYALSGFTD KAYMKISLLA DLRFLDICGA QNISDEGIGH IAKCNKLESL NLTWCVRITD AGVNTIANSC TSLEFLSLFG
301: IVGVTDRCLE TLSQTCSTTL TTLDVNGCTG IKRRSREELL QMFPRLTCFK VHS
101: LVKTECPDAL LSLEWLNLNV CQKISDNGIE AITSICPKLK VFSIYWNVRV TDAGIRNLVK NCRHITDLNL SGCKSLTDKS MQLVAESYPD LESLNITRCV
201: KITDDGLLQV LQKCFSLQTL NLYALSGFTD KAYMKISLLA DLRFLDICGA QNISDEGIGH IAKCNKLESL NLTWCVRITD AGVNTIANSC TSLEFLSLFG
301: IVGVTDRCLE TLSQTCSTTL TTLDVNGCTG IKRRSREELL QMFPRLTCFK VHS
Arabidopsis Description
F-box protein At3g58530 [Source:UniProtKB/Swiss-Prot;Acc:Q8LB33]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.