Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43846 | Canola | plastid | 98.25 | 98.25 |
| AT1G47056.1 | Thale cress | cytosol, plastid | 83.07 | 82.43 |
| Solyc04g078490.1.1 | Tomato | cytosol | 62.45 | 60.11 |
| VIT_18s0001g09940.t01 | Wine grape | plastid | 62.65 | 59.52 |
| KRH15408 | Soybean | plastid | 62.26 | 58.29 |
| PGSC0003DMT400008648 | Potato | cytosol | 18.29 | 56.29 |
| KRH05631 | Soybean | plastid | 61.28 | 55.95 |
| GSMUA_Achr3P28280_001 | Banana | plastid | 49.61 | 51.72 |
| GSMUA_Achr4P12920_001 | Banana | plastid | 49.81 | 50.1 |
| CDX81326 | Canola | cytosol | 50.97 | 50.0 |
| CDY18646 | Canola | cytosol | 50.0 | 49.05 |
| GSMUA_Achr2P05250_001 | Banana | cytosol | 46.3 | 48.97 |
| CDX83114 | Canola | cytosol | 47.08 | 48.69 |
| GSMUA_Achr9P22570_001 | Banana | plastid | 41.25 | 48.18 |
| CDX68575 | Canola | cytosol | 47.86 | 48.14 |
| GSMUA_Achr8P15580_001 | Banana | cytosol | 37.35 | 47.06 |
| OQU89081 | Sorghum | cytosol | 48.05 | 47.05 |
| GSMUA_Achr9P11380_001 | Banana | cytosol | 40.66 | 46.65 |
| TraesCS5A01G161400.1 | Wheat | cytosol, plastid | 47.67 | 46.49 |
| TraesCS5B01G158800.1 | Wheat | plastid | 47.47 | 46.3 |
| TraesCS5D01G166300.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 47.47 | 46.3 |
| Os04t0505700-01 | Rice | cytosol, mitochondrion | 37.35 | 46.27 |
| Zm00001d019677_P001 | Maize | cytosol | 46.89 | 45.9 |
| TraesCS2D01G358900.1 | Wheat | mitochondrion, plastid | 38.33 | 44.67 |
| HORVU5Hr1G050420.1 | Barley | plastid | 47.67 | 44.38 |
| Zm00001d003103_P001 | Maize | plastid | 44.75 | 44.23 |
| KXG26667 | Sorghum | plastid | 39.88 | 43.8 |
| PGSC0003DMT400091765 | Potato | cytosol | 58.95 | 42.92 |
| Zm00001d025812_P001 | Maize | plastid | 45.53 | 42.86 |
| Zm00001d025808_P001 | Maize | plastid | 45.14 | 42.49 |
| TraesCS2A01G359900.1 | Wheat | cytosol | 43.39 | 41.22 |
| HORVU0Hr1G005070.1 | Barley | plastid | 43.39 | 39.96 |
| GSMUA_Achr9P18840_001 | Banana | plastid | 48.64 | 34.25 |
| CDY01426 | Canola | cytosol | 52.14 | 24.75 |
| CDY12824 | Canola | nucleus | 52.33 | 24.68 |
| CDX88014 | Canola | cytosol | 17.7 | 22.47 |
| CDY46953 | Canola | cytosol | 17.32 | 21.65 |
| CDY40798 | Canola | cytosol | 16.93 | 21.17 |
| CDX71945 | Canola | cytosol | 12.84 | 18.7 |
| CDX87090 | Canola | cytosol | 22.18 | 18.51 |
| CDY09760 | Canola | cytosol | 22.57 | 18.5 |
| CDX90588 | Canola | cytosol | 22.57 | 18.44 |
| CDY06032 | Canola | cytosol | 12.65 | 18.41 |
| CDY19807 | Canola | cytosol | 21.98 | 18.34 |
| CDY35358 | Canola | cytosol | 22.18 | 18.3 |
| CDX88173 | Canola | cytosol | 21.79 | 18.01 |
| CDX80503 | Canola | cytosol | 21.6 | 17.87 |
| CDX76980 | Canola | cytosol | 20.43 | 17.53 |
| CDY28039 | Canola | cytosol | 12.84 | 16.92 |
| CDX88253 | Canola | cytosol | 20.82 | 16.72 |
| CDY35942 | Canola | cytosol | 12.84 | 16.71 |
| CDY19741 | Canola | cytosol | 20.04 | 16.69 |
| CDX88336 | Canola | cytosol | 10.51 | 16.67 |
| CDX87549 | Canola | cytosol | 11.48 | 16.62 |
| CDX80608 | Canola | cytosol | 20.62 | 16.56 |
| CDX68067 | Canola | cytosol | 11.48 | 16.43 |
| CDX79184 | Canola | cytosol | 11.48 | 16.43 |
| CDX80753 | Canola | endoplasmic reticulum | 21.6 | 16.42 |
| CDY29091 | Canola | plastid | 5.45 | 16.18 |
| CDY67973 | Canola | plasma membrane | 11.28 | 16.02 |
| CDX96592 | Canola | cytosol | 11.28 | 16.02 |
| CDY11182 | Canola | cytosol, endoplasmic reticulum, nucleus | 21.01 | 15.98 |
| CDY53337 | Canola | cytosol | 19.84 | 15.96 |
| CDY45764 | Canola | cytosol, peroxisome, plastid | 17.51 | 15.44 |
| CDY58588 | Canola | extracellular | 3.7 | 14.39 |
| Zm00001d037295_P001 | Maize | mitochondrion | 6.81 | 14.34 |
| CDY58589 | Canola | extracellular | 3.5 | 13.74 |
| Zm00001d028552_P001 | Maize | cytosol, extracellular, mitochondrion, plastid | 5.84 | 13.51 |
| Zm00001d039723_P001 | Maize | cytosol, extracellular, plastid | 5.84 | 12.88 |
Protein Annotations
| EnsemblPlants:CDY25663 | EnsemblPlantsGene:GSBRNA2T00032980001 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp |
| PANTHER:PTHR44356 | PANTHER:PTHR44356:SF2 | PFAM:PF12937 | ProteinID:CDY25663 | ProteinID:CDY25663.1 | SMART:SM00367 |
| SUPFAM:SSF52047 | UniParc:UPI0004EEDA89 | UniProt:A0A078GM27 | MapMan:19.2.2.8.1.4.6 | : | : |
Description
BnaC05g25420DBnaC05g25420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GM27]
Coordinates
chrLK032178:-:243886..245430
Molecular Weight (calculated)
55981.5 Da
IEP (calculated)
8.438
GRAVY (calculated)
0.045
Length
514 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQSTSAAGK IILNGRRTKL LSSKSPIETE VSPDYTSYLP DECLALVFQF LNSGNRKRCA LVCRRWMIVE GRNRHRLSLH ARSALITSIP SLFSRFDSVV
101: KLSLKCDRRS VSINDEALAM ISLRCRNLKR LNLIACRELT YKGMATFAEN CKGLNILSCG SCHFGAEGVK AVLDHCSSLE ELSIKRLRNF TDLSHEPIGP
201: GLAASSLKSI CLKELYIGEC FGPVIAGAKN LRSLKLFRCS GDWDMVLEEM AVKEHGIVEI HLERMQVTDV ALAAISNCSS LEILHLVKTP ECTNGGLAGI
301: AEKCKCLRKL HIDGWKANLI GDEGLVAVAK FCSKLQELVL IGVNPTTLSL AMLAVKCQNL ERLALCGCDT FGDPELSCIA AKCPSLRKLC IKNCPISDLG
401: IENLANGCPG LIKVKIKKCR GVMGGCADWL RTVRPMLSVN ADTVEPEGHE EGSNDAVEGG LQENRIEFPS LNSQIVAPSL ASSTRSRSAY FKSRVGLFSG
501: ISLVACTLRQ RESS
101: KLSLKCDRRS VSINDEALAM ISLRCRNLKR LNLIACRELT YKGMATFAEN CKGLNILSCG SCHFGAEGVK AVLDHCSSLE ELSIKRLRNF TDLSHEPIGP
201: GLAASSLKSI CLKELYIGEC FGPVIAGAKN LRSLKLFRCS GDWDMVLEEM AVKEHGIVEI HLERMQVTDV ALAAISNCSS LEILHLVKTP ECTNGGLAGI
301: AEKCKCLRKL HIDGWKANLI GDEGLVAVAK FCSKLQELVL IGVNPTTLSL AMLAVKCQNL ERLALCGCDT FGDPELSCIA AKCPSLRKLC IKNCPISDLG
401: IENLANGCPG LIKVKIKKCR GVMGGCADWL RTVRPMLSVN ADTVEPEGHE EGSNDAVEGG LQENRIEFPS LNSQIVAPSL ASSTRSRSAY FKSRVGLFSG
501: ISLVACTLRQ RESS
001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR
Arabidopsis Description
VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.