Factsheet for Zm00001d019677_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU89081	Sorghum	cytosol	90.48	90.48
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	79.81	79.51
TraesCS5B01G158800.1	Wheat	plastid	79.43	79.13
TraesCS5A01G161400.1	Wheat	cytosol, plastid	79.24	78.94
HORVU5Hr1G050420.1	Barley	plastid	80.0	76.09
GSMUA_Achr2P05250_001	Banana	cytosol	46.48	50.21
VIT_18s0001g09940.t01	Wine grape	plastid	50.86	49.35
AT1G47056.1	Thale cress	cytosol, plastid	48.0	48.65
Solyc04g078490.1.1	Tomato	cytosol	49.14	48.31
KRH15408	Soybean	plastid	50.48	48.27
CDY43846	Canola	plastid	46.29	47.28
Bra032213.1-P	Field mustard	plastid	46.29	47.28
CDY25663	Canola	plastid	45.9	46.89
CDX83114	Canola	cytosol	44.0	46.48
KRH05631	Soybean	plastid	49.71	46.36
Zm00001d003103_P001	Maize	plastid	45.9	46.35
CDX81326	Canola	cytosol	46.1	46.18
CDY18646	Canola	cytosol	45.71	45.8
Bra037120.1-P	Field mustard	cytosol	45.71	45.63
Bra029994.1-P	Field mustard	cytosol	44.38	45.6
AT5G67250.1	Thale cress	cytosol	45.52	45.35
CDX68575	Canola	cytosol	44.0	45.21
Solyc03g044220.1.1	Tomato	cytosol	47.05	44.99
PGSC0003DMT400053918	Potato	cytosol	47.05	44.99
VIT_07s0129g01110.t01	Wine grape	plastid	48.19	44.94
PGSC0003DMT400064250	Potato	mitochondrion	46.67	44.55
Solyc02g092990.1.1	Tomato	plastid	46.67	44.55
KRH28425	Soybean	cytosol	44.19	44.11
KRH04530	Soybean	cytosol	45.14	43.97
AT3G50080.1	Thale cress	cytosol	43.62	43.87
KRH77049	Soybean	cytosol	43.05	43.3
KRH57971	Soybean	cytosol	45.71	42.93
Zm00001d025808_P001	Maize	plastid	44.57	42.86
Zm00001d025812_P001	Maize	plastid	44.38	42.67
AT4G07400.1	Thale cress	nucleus	44.57	42.24
PGSC0003DMT400008648	Potato	cytosol	12.38	38.92
KRH52037	Soybean	cytosol	28.76	37.38
PGSC0003DMT400091765	Potato	cytosol	47.05	34.99
GSMUA_Achr9P18840_001	Banana	plastid	47.62	34.25
Zm00001d051219_P001	Maize	cytosol	18.48	23.26
CDY01426	Canola	cytosol	46.48	22.53
CDY12824	Canola	nucleus	46.29	22.29
Zm00001d015974_P002	Maize	cytosol	13.52	19.83
KRH61346	Soybean	cytosol	24.95	18.77
Zm00001d038224_P004	Maize	cytosol	12.95	18.48
Zm00001d007294_P001	Maize	cytosol	13.9	17.98
Zm00001d007640_P001	Maize	cytosol	20.95	17.52
Zm00001d023825_P001	Maize	cytosol	21.52	17.12
Zm00001d048695_P001	Maize	cytosol	20.95	16.98
Zm00001d041635_P002	Maize	cytosol	20.95	16.59
Zm00001d000224_P001	Maize	cytosol	13.52	16.4
Zm00001d053642_P001	Maize	cytosol	19.81	15.98
Zm00001d044622_P002	Maize	mitochondrion	21.33	15.91
Zm00001d015778_P001	Maize	cytosol	19.24	15.71
Zm00001d005072_P003	Maize	mitochondrion	20.95	15.17
Zm00001d037295_P001	Maize	mitochondrion	6.67	14.34
Zm00001d036880_P003	Maize	cytosol	19.43	13.86
Zm00001d000408_P001	Maize	cytosol	19.43	13.73
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	5.71	13.51
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	5.71	12.88

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	UniProt:A0A1D6HZQ5	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtyp	ProteinID:ONM53541.1	PFAM:PF12937	PFscan:PS50181	PANTHER:PTHR44356	PANTHER:PTHR44356:SF2
SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI00084476E2	EnsemblPlantsGene:Zm00001d019677	EnsemblPlants:Zm00001d019677_P001
EnsemblPlants:Zm00001d019677_T001	SEG:seg	:	:	:	:

Description

F-box protein

Coordinates

chr7:+:50207889..50209466

Molecular Weight (calculated)

56023.0 Da

IEP (calculated)

8.533

GRAVY (calculated)

-0.001

Length

525 amino acids

Sequence
(BLAST)

001: MGQCLSAPRH RKPPPLPLSP ALSVPPQILS SIADAVGEDH TADLPEELLA LVFGLLGSGD RKRCSLVCRR WLVVEAASRF RLAIDARASP LAESALPRLL
101: ARFPAVSKLA LKCDRRAESV GDPALAQVAD RLGPGLRRLK LRSLRAVTDD GVAALAAAAA NLRKLSVGSC DFGAKGIEAV LRSCLHLEEL SVKRLRGLAE
201: SEPISVSSPR LQSLSLKDLY NGQCFSCLIT QSPNLKTLKI IRCAGNWDIV LQDVPRDSLL AELHLEKLQV SDWGVAALYG LEVLYLAKAP EVTDIGLAEL
301: AAKSPRLRKL HVDGWKANRI GDRGLAAVAQ KCSSLQELVL IGVNLTSLSL ELIATNCPTL ERLALCGSDT FGDAEMSCVA SKCSALRKLC IKACPVSDAG
401: MNKLAEGCPR LVKVKVKKCR RVTSECAEHL RASRNGALAV NFDTPGGAGE LQDGRSVDDS GALDNAGSDV LPEDLDDRIG PDLSSGSSGR PSRWKALMGA
501: LMLRSFSVSI FQRQPRGACS TSHES

Best Arabidopsis Sequence Match ( AT1G47056.1 )
(BLAST)

001: MGQSTSAAGN SILNRRRSKS FTLKFPIESI ESEISQPDYT SSLPDECLAL VFQFLNSGNR KRCALVCRRW MIVEGQNRYR LSLHARSDLI TSIPSLFSRF
101: DSVTKLSLKC DRRSVSIGDE ALVKISLRCR NLKRLKLRAC RELTDVGMAA FAENCKDLKI FSCGSCDFGA KGVKAVLDHC SNLEELSIKR LRGFTDIAPE
201: MIGPGVAASS LKSICLKELY NGQCFGPVIV GAKNLKSLKL FRCSGDWDLL LQEMSGKDHG VVEIHLERMQ VSDVALSAIS YCSSLESLHL VKTPECTNFG
301: LAAIAEKCKR LRKLHIDGWK ANLIGDEGLV AVAKFCSQLQ ELVLIGVNPT TLSLGMLAAK CLNLERLALC GCDTFGDPEL SCIAAKCPAL RKLCIKNCPI
401: SDVGIENLAN GCPGLTKVKI KKCKGVLGGC ADWLRTVRPM LSVNADTMEQ EHEEAASNDV VGGSQENGIE FPQLNSQIMA SSIASSSRNR SGYFKSGIGL
501: FSGMSLVPCT SRQRRASR

Arabidopsis Description

VFB1F-box protein At1g47056 [Source:UniProtKB/Swiss-Prot;Acc:Q9C626]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.