Factsheet for AT3G50080.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029994.1-P	Field mustard	cytosol	76.82	78.47
CDX83114	Canola	cytosol	74.52	78.27
CDX68575	Canola	cytosol	76.25	77.89
AT5G67250.1	Thale cress	cytosol	71.84	71.16
KRH77049	Soybean	cytosol	53.45	53.45
KRH28425	Soybean	cytosol	53.45	53.04
VIT_07s0129g01110.t01	Wine grape	plastid	56.13	52.04
Solyc02g092990.1.1	Tomato	plastid	54.02	51.27
PGSC0003DMT400064250	Potato	mitochondrion	54.02	51.27
Solyc03g044220.1.1	Tomato	cytosol	52.87	50.27
KRH04530	Soybean	cytosol	51.72	50.09
PGSC0003DMT400053918	Potato	cytosol	52.49	49.91
KRH57971	Soybean	cytosol	52.3	48.84
AT1G47056.1	Thale cress	cytosol, plastid	48.08	48.46
GSMUA_Achr3P28280_001	Banana	plastid	45.59	48.28
AT4G07400.1	Thale cress	nucleus	50.96	48.01
GSMUA_Achr9P11380_001	Banana	cytosol	39.66	46.21
GSMUA_Achr2P05250_001	Banana	cytosol	41.76	44.86
OQU89081	Sorghum	cytosol	45.02	44.76
GSMUA_Achr8P15580_001	Banana	cytosol	34.87	44.61
GSMUA_Achr4P12920_001	Banana	plastid	43.3	44.23
TraesCS5A01G161400.1	Wheat	cytosol, plastid	44.64	44.21
TraesCS5B01G158800.1	Wheat	plastid	44.44	44.02
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	44.44	44.02
GSMUA_Achr9P22570_001	Banana	plastid	36.97	43.86
Zm00001d019677_P001	Maize	cytosol	43.87	43.62
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	36.21	42.86
HORVU5Hr1G050420.1	Barley	plastid	44.44	42.03
Zm00001d003103_P001	Maize	plastid	41.57	41.73
KXG26667	Sorghum	plastid	37.16	41.45
Os04t0505700-01	Rice	cytosol, mitochondrion	32.76	41.2
TraesCS2A01G359900.1	Wheat	cytosol	41.0	39.56
Zm00001d025812_P001	Maize	plastid	41.0	39.19
Zm00001d025808_P001	Maize	plastid	40.8	39.01
HORVU0Hr1G005070.1	Barley	plastid	40.42	37.81
GSMUA_Achr9P18840_001	Banana	plastid	45.21	32.33
AT5G23340.1	Thale cress	cytosol	17.05	21.98
AT3G58530.1	Thale cress	cytosol	12.45	18.41
AT5G25350.1	Thale cress	cytosol	20.69	17.34
AT2G25490.1	Thale cress	plastid	20.5	17.04
AT1G77000.1	Thale cress	cytosol	11.69	16.94
AT4G15475.1	Thale cress	cytosol	19.73	16.89
AT3G07550.2	Thale cress	cytosol	12.64	16.71
AT1G21410.1	Thale cress	cytosol	11.3	16.39
AT5G27920.1	Thale cress	cytosol, extracellular, peroxisome	18.97	15.42
AT5G01720.1	Thale cress	vacuole	18.97	14.89
Zm00001d028552_P001	Maize	cytosol, extracellular, mitochondrion, plastid	5.56	13.06
Zm00001d039723_P001	Maize	cytosol, extracellular, plastid	5.56	12.45
Zm00001d037295_P001	Maize	mitochondrion	5.75	12.3

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EntrezGene:824170	UniProt:A0A178VA62	UniProt:A3KPF1
ProteinID:AEE78624.1	ArrayExpress:AT3G50080	EnsemblPlantsGene:AT3G50080	RefSeq:AT3G50080	TAIR:AT3G50080	RefSeq:AT3G50080-TAIR-G
EnsemblPlants:AT3G50080.1	TAIR:AT3G50080.1	Unigene:At.35535	EMBL:BT030318	EMBL:BX822976	ProteinID:CAB62116.1
ncoils:Coil	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_Cys-con_subtyp	RefSeq:NP_566928.1	ProteinID:OAP01812.1	PFAM:PF00646	PFAM:PF13516	PO:PO:0000013
PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281
PANTHER:PTHR44356	PANTHER:PTHR44356:SF3	UniProt:Q9SN10	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI000009CB93	Symbol:VFB2	SEG:seg	:	:

Description

FBL16F-box/LRR-repeat protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN10]

Coordinates

chr3:+:18572624..18574548

Molecular Weight (calculated)

57252.2 Da

IEP (calculated)

8.338

GRAVY (calculated)

0.053

Length

522 amino acids

Sequence
(BLAST)

001: MGQAPSSPAE PNVRDTSLCL WSPEFLDCES IGFEDGDYDF TANLPDDCLA HIFQFLSAGD RKRCSLVSKR WLLVDGQNRH RLSLDAKSEI LPFLPCIFNR
101: FDSVTKLALR CDRRSFSLSD EALFIVSIRC SNLIRVKLRG CREITDLGME SFARNCKSLR KLSCGSCTFG AKGINAMLEH CKVLEELSLK RIRGLHELAE
201: PIKLSLSASL RSVFLKELVN GQVFGSLVAT RTLKKVKIIR CLGNWDRVFE MNGNGNSSLT EIRLERLQVT DIGLFGISKC SNLETLHIVK TPDCSNLGLA
301: SVVERCKLLR KLHIDGWRVK RIGDQGLMSV AKHCLNLQEL VLIGVDATYM SLSAIASNCK KLERLALCGS GTIGDAEIGC IAEKCVTLRK FCIKGCLISD
401: VGVQALALGC PKLVKLKVKK CSLVTGEVRE WLRERRMTLV VSMDDDETNG VGLVDGGDQR VLETVVEEEA PPVIDGDGGL GVAGGGRLGL AILKTKLGLL
501: AGRNLVACTL RRWSQSEATS SI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.