Factsheet for AT1G21410.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016422.1-P	Field mustard	cytosol	90.28	92.07
CDX96592	Canola	cytosol	91.67	91.16
CDY67973	Canola	plasma membrane	90.56	90.06
AT1G77000.1	Thale cress	cytosol	83.06	83.06
KRH64574	Soybean	cytosol	68.33	76.64
CDY58589	Canola	extracellular	27.22	74.81
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	70.56	74.49
CDY58588	Canola	extracellular	26.67	72.73
KRH53355	Soybean	cytosol	72.78	70.43
KRH15905	Soybean	cytosol	72.5	70.35
Solyc04g063380.2.1	Tomato	cytosol	70.56	69.78
KRH18090	Soybean	cytosol	72.22	69.33
Zm00001d038224_P004	Maize	cytosol	66.67	65.22
GSMUA_Achr10P...	Banana	cytosol	63.33	64.23
EES18256	Sorghum	cytosol, nucleus, plastid	65.56	63.96
Os05t0425700-01	Rice	cytosol	65.56	62.77
TraesCS1A01G264900.1	Wheat	cytosol	64.44	62.7
TraesCS1D01G265100.1	Wheat	cytosol	64.17	62.43
HORVU1Hr1G065030.2	Barley	cytosol	65.56	62.27
GSMUA_Achr6P18620_001	Banana	cytosol	63.33	62.13
Os01t0881900-01	Rice	cytosol	65.28	62.01
TraesCS1B01G275600.1	Wheat	cytosol	64.72	61.48
GSMUA_AchrUn_...	Banana	cytosol	62.78	61.41
TraesCS3A01G407700.1	Wheat	cytosol	64.72	61.32
TraesCS3D01G402900.2	Wheat	cytosol	64.72	61.32
TraesCS3B01G440600.2	Wheat	cytosol	64.72	61.15
VIT_18s0001g15010.t01	Wine grape	mitochondrion	72.5	60.98
EES03986	Sorghum	cytosol	62.78	59.32
HORVU3Hr1G091200.4	Barley	cytosol	65.0	55.71
Zm00001d000224_P001	Maize	cytosol	63.06	52.42
AT3G58530.1	Thale cress	cytosol	18.06	18.41
AT5G23340.1	Thale cress	cytosol	20.56	18.27
AT2G25490.1	Thale cress	plastid	23.89	13.69
AT3G07550.2	Thale cress	cytosol	15.0	13.67
AT5G01720.1	Thale cress	vacuole	24.17	13.08
AT5G25350.1	Thale cress	cytosol	22.22	12.84
AT4G15475.1	Thale cress	cytosol	21.39	12.62
AT5G67250.1	Thale cress	cytosol	16.94	11.57
AT3G50080.1	Thale cress	cytosol	16.39	11.3
AT5G27920.1	Thale cress	cytosol, extracellular, peroxisome	20.0	11.21
AT1G47056.1	Thale cress	cytosol, plastid	15.83	11.0
AT4G07400.1	Thale cress	nucleus	16.11	10.47

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	EntrezGene:838740	UniProt:A0A178W530	ProteinID:AAF87895.1
ProteinID:AEE30100.1	ProteinID:ANM58718.1	ArrayExpress:AT1G21410	EnsemblPlantsGene:AT1G21410	RefSeq:AT1G21410	TAIR:AT1G21410
RefSeq:AT1G21410-TAIR-G	EnsemblPlants:AT1G21410.1	TAIR:AT1G21410.1	EMBL:AY058081	EMBL:AY085898	EMBL:AY090308
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009653	GO:GO:0009719	GO:GO:0009734	GO:GO:0009791	GO:GO:0009987	GO:GO:0010311
GO:GO:0016567	GO:GO:0016740	GO:GO:0019005	GO:GO:0019538	GO:GO:0031146	GO:GO:0051781
GO:GO:0071365	InterPro:IPR001611	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:Leu-rich_rpt_Cys-con_subtyp	RefSeq:NP_001321134.1	RefSeq:NP_564139.1	ProteinID:OAP13368.1	PFAM:PF00646	PFAM:PF13516
PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281
PANTHER:PTHR44673	PANTHER:PTHR44673:SF1	UniProt:Q9LPL4	Symbol:SKP2A	SMART:SM00367	SUPFAM:SSF52047
SUPFAM:SSF81383	UniParc:UPI00000A85E3	SEG:seg	:	:	:

Description

SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]

Coordinates

chr1:+:7496998..7499616

Molecular Weight (calculated)

39616.1 Da

IEP (calculated)

7.325

GRAVY (calculated)

0.016

Length

360 amino acids

Sequence
(BLAST)

001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.