Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES18256 | Sorghum | cytosol, nucleus, plastid | 84.31 | 85.91 |
| Zm00001d038224_P004 | Maize | cytosol | 83.51 | 85.33 |
| TraesCS1A01G264900.1 | Wheat | cytosol | 81.38 | 82.7 |
| HORVU1Hr1G065030.2 | Barley | cytosol | 83.24 | 82.59 |
| TraesCS1D01G265100.1 | Wheat | cytosol | 81.12 | 82.43 |
| TraesCS1B01G275600.1 | Wheat | cytosol | 82.45 | 81.79 |
| Os01t0881900-01 | Rice | cytosol | 76.86 | 76.25 |
| GSMUA_Achr10P... | Banana | cytosol | 68.62 | 72.68 |
| PGSC0003DMT400063955 | Potato | cytosol, extracellular, nucleus | 62.77 | 69.21 |
| GSMUA_Achr6P18620_001 | Banana | cytosol | 66.49 | 68.12 |
| KRH64574 | Soybean | cytosol | 57.71 | 67.6 |
| CDX88336 | Canola | cytosol | 56.91 | 66.05 |
| AT1G21410.1 | Thale cress | cytosol | 62.77 | 65.56 |
| GSMUA_AchrUn_... | Banana | cytosol | 64.1 | 65.49 |
| Solyc04g063380.2.1 | Tomato | cytosol | 63.3 | 65.38 |
| Bra016422.1-P | Field mustard | cytosol | 61.17 | 65.16 |
| CDY67973 | Canola | plasma membrane | 61.97 | 64.36 |
| CDX87549 | Canola | cytosol | 60.64 | 64.23 |
| Bra015699.1-P | Field mustard | cytosol | 60.37 | 64.12 |
| CDX96592 | Canola | cytosol | 61.7 | 64.09 |
| Bra003692.1-P | Field mustard | cytosol | 60.11 | 62.95 |
| CDX79184 | Canola | cytosol | 60.11 | 62.95 |
| KRH53355 | Soybean | cytosol | 62.23 | 62.9 |
| CDX68067 | Canola | cytosol | 59.84 | 62.67 |
| AT1G77000.1 | Thale cress | cytosol | 59.57 | 62.22 |
| KRH18090 | Soybean | cytosol | 61.97 | 62.13 |
| KRH15905 | Soybean | cytosol | 61.17 | 61.99 |
| CDY58589 | Canola | extracellular | 21.01 | 60.31 |
| VIT_18s0001g15010.t01 | Wine grape | mitochondrion | 68.35 | 60.05 |
| CDY58588 | Canola | extracellular | 20.48 | 58.33 |
| Os11t0264200-01 | Rice | cytosol | 17.29 | 17.06 |
| Os11t0641200-01 | Rice | cytosol | 15.69 | 16.48 |
| Os02t0281150-01 | Rice | cytosol | 14.36 | 15.17 |
| Os02t0636400-01 | Rice | cytosol | 7.45 | 14.0 |
| Os04t0505700-01 | Rice | cytosol, mitochondrion | 15.43 | 13.98 |
| Os10t0148800-01 | Rice | cytosol | 18.35 | 13.86 |
| Os02t0200900-01 | Rice | cytosol | 21.01 | 11.97 |
| Os12t0108500-01 | Rice | cytosol, plasma membrane, plastid | 21.54 | 11.62 |
| Os12t0552700-01 | Rice | cytosol, peroxisome | 11.17 | 11.26 |
| Os06t0605900-01 | Rice | cytosol | 18.09 | 10.85 |
| Os11t0108932-01 | Rice | nucleus | 8.78 | 10.58 |
| Os09t0113000-01 | Rice | cytosol, nucleus | 0.53 | 2.47 |
Protein Annotations
| MapMan:19.2.2.8.1.4.1 | Gene3D:3.80.10.10 | EntrezGene:4338850 | ProteinID:AAV25005.1 | ProteinID:BAF17512.1 | ProteinID:BAS94109.1 |
| ProteinID:EEE63782.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp |
| EnsemblPlantsGene:Os05g0425700 | EnsemblPlants:Os05t0425700-01 | PFAM:PF00646 | PFAM:PF13516 | PANTHER:PTHR44673 | PANTHER:PTHR44673:SF2 |
| UniProt:Q60EC4 | SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI000044D45E | RefSeq:XP_015640280.1 |
| SEG:seg | : | : | : | : | : |
Description
F-box protein 258Similar to F-box protein AtFBL5. (Os05t0425700-01);Similar to F-box protein AtFBL5. (Os05t0425700-02)
Coordinates
chr5:+:20847174..20851077
Molecular Weight (calculated)
40727.2 Da
IEP (calculated)
8.130
GRAVY (calculated)
-0.002
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSGRSANGE LDACFRSLML SISSGRGQAE GGGAMPTLSG WKDLPIELLL RIMSIIGDDR MLVVASGVCT GWRDALGWGL TNLSLSRCQQ NMNNLMISLA
101: HKFTKLQVLT LRQNIPQLED SAVEAVSNYC HDLRELDLSR SFRLSDRSLY ALARGCPQLT KLNISGCSNF SDTALTYLTF HCKNFKCLNL CGCGKAATDR
201: ALQAIARNCG QLQSLNLGWC EDVTDKGVTS LASGCPDLRA LDLCGCVLIT DESVIALATG CPHLRSLGLY YCQNITDRAM YSLANSRVKS KRRRWDSVRS
301: SSSKEEDGLA NLNISQCTAL TPPAVQAVCD SFPALHTCPG RHSLIISGCL SLTSVHCACA LHPHRAGRTM VPSHAY
101: HKFTKLQVLT LRQNIPQLED SAVEAVSNYC HDLRELDLSR SFRLSDRSLY ALARGCPQLT KLNISGCSNF SDTALTYLTF HCKNFKCLNL CGCGKAATDR
201: ALQAIARNCG QLQSLNLGWC EDVTDKGVTS LASGCPDLRA LDLCGCVLIT DESVIALATG CPHLRSLGLY YCQNITDRAM YSLANSRVKS KRRRWDSVRS
301: SSSKEEDGLA NLNISQCTAL TPPAVQAVCD SFPALHTCPG RHSLIISGCL SLTSVHCACA LHPHRAGRTM VPSHAY
001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH
Arabidopsis Description
SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.