Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G402900.2 | Wheat | cytosol | 86.54 | 86.32 |
| TraesCS3A01G407700.1 | Wheat | cytosol | 86.28 | 86.05 |
| TraesCS3B01G440600.2 | Wheat | cytosol | 85.75 | 85.3 |
| EES03986 | Sorghum | cytosol | 85.75 | 85.3 |
| Os05t0425700-01 | Rice | cytosol | 76.25 | 76.86 |
| HORVU3Hr1G091200.4 | Barley | cytosol | 84.96 | 76.67 |
| GSMUA_Achr10P... | Banana | cytosol | 68.07 | 72.68 |
| Zm00001d000224_P001 | Maize | cytosol | 82.59 | 72.29 |
| GSMUA_Achr6P18620_001 | Banana | cytosol | 66.49 | 68.66 |
| PGSC0003DMT400063955 | Potato | cytosol, extracellular, nucleus | 61.21 | 68.04 |
| KRH64574 | Soybean | cytosol | 56.99 | 67.29 |
| GSMUA_AchrUn_... | Banana | cytosol | 64.91 | 66.85 |
| Bra016422.1-P | Field mustard | cytosol | 62.01 | 66.57 |
| CDX88336 | Canola | cytosol | 56.73 | 66.36 |
| CDY67973 | Canola | plasma membrane | 62.53 | 65.47 |
| AT1G21410.1 | Thale cress | cytosol | 62.01 | 65.28 |
| CDX96592 | Canola | cytosol | 62.27 | 65.19 |
| Solyc04g063380.2.1 | Tomato | cytosol | 62.27 | 64.84 |
| CDX87549 | Canola | cytosol | 60.16 | 64.23 |
| Bra015699.1-P | Field mustard | cytosol | 59.89 | 64.12 |
| Bra003692.1-P | Field mustard | cytosol | 59.37 | 62.67 |
| CDX79184 | Canola | cytosol | 59.1 | 62.4 |
| CDX68067 | Canola | cytosol | 59.1 | 62.4 |
| KRH53355 | Soybean | cytosol | 60.95 | 62.1 |
| CDY58589 | Canola | extracellular | 21.37 | 61.83 |
| KRH15905 | Soybean | cytosol | 60.42 | 61.73 |
| AT1G77000.1 | Thale cress | cytosol | 58.58 | 61.67 |
| KRH18090 | Soybean | cytosol | 60.69 | 61.33 |
| CDY58588 | Canola | extracellular | 20.84 | 59.85 |
| VIT_18s0001g15010.t01 | Wine grape | mitochondrion | 65.17 | 57.71 |
| Os11t0264200-01 | Rice | cytosol | 18.21 | 18.11 |
| Os11t0641200-01 | Rice | cytosol | 16.36 | 17.32 |
| Os02t0281150-01 | Rice | cytosol | 14.78 | 15.73 |
| Os02t0636400-01 | Rice | cytosol | 7.39 | 14.0 |
| Os04t0505700-01 | Rice | cytosol, mitochondrion | 15.3 | 13.98 |
| Os10t0148800-01 | Rice | cytosol | 18.21 | 13.86 |
| Os12t0108500-01 | Rice | cytosol, plasma membrane, plastid | 22.96 | 12.48 |
| Os11t0108932-01 | Rice | nucleus | 10.03 | 12.18 |
| Os02t0200900-01 | Rice | cytosol | 20.84 | 11.97 |
| Os12t0552700-01 | Rice | cytosol, peroxisome | 11.61 | 11.8 |
| Os06t0605900-01 | Rice | cytosol | 17.94 | 10.85 |
| Os09t0113000-01 | Rice | cytosol, nucleus | 0.53 | 2.47 |
Protein Annotations
| MapMan:19.2.2.8.1.4.1 | Gene3D:3.80.10.10 | EntrezGene:4324993 | EMBL:AK102849 | ProteinID:BAB90360.1 | ProteinID:BAC06242.1 |
| ProteinID:BAF06918.1 | ProteinID:BAS75566.1 | ProteinID:EAZ14383.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp | EnsemblPlantsGene:Os01g0881900 |
| EnsemblPlants:Os01t0881900-01 | PFAM:PF13516 | PANTHER:PTHR44673 | PANTHER:PTHR44673:SF2 | UniProt:Q8RZQ3 | SMART:SM00367 |
| SUPFAM:SSF52047 | UniParc:UPI00000A2C5C | RefSeq:XP_015612144.1 | RefSeq:XP_015612151.1 | SEG:seg | : |
Description
Leucine-rich repeat, cysteine-containing containing protein. (Os01t0881900-01)
Coordinates
chr1:-:38275062..38279030
Molecular Weight (calculated)
40744.8 Da
IEP (calculated)
6.988
GRAVY (calculated)
0.003
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGEQLMSGE LDNSFNALMV SGEGESGQAH HEGTGTTLLG WKDLPMELLL RILSMAGDDR MVIVGSGVCT GWRDTLEWGV TNLSLSWCQA HMNDLVMSLA
101: QKFTKLQVLS LRQIKPQLED SAVEAVANNC HDLRELDLSR SFRLSDRSLY ALAHGCPHLT RLNISGCSNF SDAALAYLSS QCKNLKCLNL CGCVRAVSDR
201: ALQAIACNCG QLQSLNLGWC DSVTDKGVTS LASGCPELRA LDLCGCVLIT DESVVALANG CPHLRSLGLY YCQNITDRAM YSLAANSRRV RSKGRSWDAA
301: ARKNAGAGAD GLASLNISQC TALTPPAVQA VCDSFPALHT CPERHSLIIS GCLSLTSVHC ACAHHPHRHG RAILSNHAY
101: QKFTKLQVLS LRQIKPQLED SAVEAVANNC HDLRELDLSR SFRLSDRSLY ALAHGCPHLT RLNISGCSNF SDAALAYLSS QCKNLKCLNL CGCVRAVSDR
201: ALQAIACNCG QLQSLNLGWC DSVTDKGVTS LASGCPELRA LDLCGCVLIT DESVVALANG CPHLRSLGLY YCQNITDRAM YSLAANSRRV RSKGRSWDAA
301: ARKNAGAGAD GLASLNISQC TALTPPAVQA VCDSFPALHT CPERHSLIIS GCLSLTSVHC ACAHHPHRHG RAILSNHAY
001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH
Arabidopsis Description
SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.