Factsheet for TraesCS3B01G440600.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G407700.1	Wheat	cytosol	98.16	98.42
TraesCS3D01G402900.2	Wheat	cytosol	97.38	97.63
HORVU3Hr1G091200.4	Barley	cytosol	96.33	87.38
Os01t0881900-01	Rice	cytosol	85.3	85.75
EES03986	Sorghum	cytosol	82.41	82.41
TraesCS1B01G275600.1	Wheat	cytosol	75.85	76.25
GSMUA_Achr10P...	Banana	cytosol	67.19	72.11
Zm00001d000224_P001	Maize	cytosol	80.84	71.13
KRH64574	Soybean	cytosol	57.22	67.91
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	60.63	67.74
GSMUA_Achr6P18620_001	Banana	cytosol	64.57	67.03
GSMUA_AchrUn_...	Banana	cytosol	63.78	66.03
CDX88336	Canola	cytosol	55.91	65.74
Bra016422.1-P	Field mustard	cytosol	60.1	64.87
Solyc04g063380.2.1	Tomato	cytosol	61.94	64.84
AT1G21410.1	Thale cress	cytosol	61.15	64.72
CDY67973	Canola	plasma membrane	60.89	64.09
CDX96592	Canola	cytosol	60.63	63.81
CDX87549	Canola	cytosol	58.79	63.1
Bra015699.1-P	Field mustard	cytosol	58.53	62.99
KRH53355	Soybean	cytosol	61.42	62.9
Bra003692.1-P	Field mustard	cytosol	58.27	61.84
CDX68067	Canola	cytosol	58.01	61.56
CDX79184	Canola	cytosol	58.01	61.56
KRH15905	Soybean	cytosol	59.84	61.46
KRH18090	Soybean	cytosol	59.84	60.8
AT1G77000.1	Thale cress	cytosol	57.22	60.56
CDY58589	Canola	extracellular	20.73	60.31
CDY58588	Canola	extracellular	20.21	58.33
VIT_18s0001g15010.t01	Wine grape	mitochondrion	65.09	57.94
TraesCS6B01G262900.1	Wheat	cytosol	20.21	18.47
TraesCS3B01G080300.1	Wheat	cytosol	15.49	16.81
TraesCS4B01G085300.2	Wheat	plastid	16.54	15.56
TraesCS5B01G158800.1	Wheat	plastid	18.37	13.28
TraesCS5B01G097800.2	Wheat	cytosol	21.52	12.41
TraesCS7B01G278800.1	Wheat	cytosol	20.47	12.06
TraesCS6B01G210700.1	Wheat	cytosol	19.16	11.25
TraesCS5B01G149400.1	Wheat	mitochondrion	19.95	11.14

Protein Annotations

EnsemblPlants:TraesCS3B01G440600.2	EnsemblPlantsGene:TraesCS3B01G440600	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44673
PANTHER:PTHR44673:SF2	PFAM:PF13516	SEG:seg	SMART:SM00367	SUPFAM:SSF52047	MapMan:19.2.2.8.1.4.1

Description

No Description!

Coordinates

chr3B:-:680252643..680254869

Molecular Weight (calculated)

40875.8 Da

IEP (calculated)

7.179

GRAVY (calculated)

0.027

Length

381 amino acids

Sequence
(BLAST)

001: MVNAQMVSGY LDNSFNALVV SGGGESGGQT QNGVTDTTLS GWKDLPMELL LRIISVAGDD RMAIVASGVC TGWRDALGWG ATSLSFSWCQ DHMNELVISL
101: AHKFTKLQVL SLRQIKPQLE DSAVEAVANS CHDLRELDLS RSFRLSDRSL YALAHGCPRL TRLNISGCSN FSDAALIYLT SQCKNLKCLN LCGCVRAASD
201: RALQAIACNC SQLQSLNLGW CDTVTDGGVT SLASGCPELR AVDLCGCVLI TDESVVALAN GCPHLRSLGL YYCQNITDRA MYSLAENSRI RSKGMSWDTA
301: KNSRGRDDKD GLASLNISQC TALTPPAVQA VCDSFPALHT CPERHSLIIS GCLSLTTVHC ACAHHRHRAG AGRAILSNHA Y

Best Arabidopsis Sequence Match ( AT1G21410.1 )
(BLAST)

001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH

Arabidopsis Description

SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.