Factsheet for GSMUA_Achr6P18620_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	71.66	71.47
GSMUA_Achr10P...	Banana	cytosol	65.67	67.89
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	62.94	67.74
Zm00001d038224_P004	Maize	cytosol	67.57	67.39
EES18256	Sorghum	cytosol, nucleus, plastid	67.03	66.67
Os01t0881900-01	Rice	cytosol	68.66	66.49
Os05t0425700-01	Rice	cytosol	68.12	66.49
TraesCS1A01G264900.1	Wheat	cytosol	67.03	66.49
CDX88336	Canola	cytosol	58.58	66.36
KRH64574	Soybean	cytosol	58.04	66.36
TraesCS1D01G265100.1	Wheat	cytosol	66.76	66.22
CDX87549	Canola	cytosol	63.76	65.92
Bra015699.1-P	Field mustard	cytosol	63.22	65.54
HORVU1Hr1G065030.2	Barley	cytosol	67.57	65.44
TraesCS3D01G402900.2	Wheat	cytosol	67.57	65.26
TraesCS3A01G407700.1	Wheat	cytosol	67.57	65.26
TraesCS1B01G275600.1	Wheat	cytosol	67.3	65.17
EES03986	Sorghum	cytosol	67.57	65.09
Bra016422.1-P	Field mustard	cytosol	62.4	64.87
TraesCS3B01G440600.2	Wheat	cytosol	67.03	64.57
Solyc04g063380.2.1	Tomato	cytosol	64.03	64.56
CDX79184	Canola	cytosol	62.67	64.07
CDX96592	Canola	cytosol	62.94	63.81
Bra003692.1-P	Field mustard	cytosol	62.13	63.51
CDX68067	Canola	cytosol	62.13	63.51
AT1G21410.1	Thale cress	cytosol	62.13	63.33
CDY67973	Canola	plasma membrane	62.4	63.26
KRH15905	Soybean	cytosol	63.49	62.8
AT1G77000.1	Thale cress	cytosol	61.04	62.22
KRH53355	Soybean	cytosol	62.94	62.1
KRH18090	Soybean	cytosol	62.94	61.6
VIT_18s0001g15010.t01	Wine grape	mitochondrion	69.75	59.81
HORVU3Hr1G091200.4	Barley	cytosol	67.3	58.81
CDY58589	Canola	extracellular	20.71	58.02
CDY58588	Canola	extracellular	20.16	56.06
Zm00001d000224_P001	Maize	cytosol	65.94	55.89
GSMUA_Achr8P13910_001	Banana	mitochondrion	19.07	19.77
GSMUA_Achr5P19410_001	Banana	cytosol	21.8	18.82
GSMUA_Achr2P17760_001	Banana	cytosol	17.44	18.08
GSMUA_Achr8P28940_001	Banana	cytosol	18.26	17.63
GSMUA_Achr8P15580_001	Banana	cytosol	16.08	14.46
GSMUA_Achr3P22880_001	Banana	cytosol	24.25	13.91
GSMUA_Achr9P28510_001	Banana	cytosol, nucleus, peroxisome	23.71	13.3
GSMUA_Achr6P05220_001	Banana	cytosol	23.16	13.0
GSMUA_Achr3P28280_001	Banana	plastid	17.44	12.98
GSMUA_Achr9P11380_001	Banana	cytosol	15.8	12.95
GSMUA_Achr4P30680_001	Banana	cytosol	22.89	12.88
GSMUA_Achr6P20450_001	Banana	cytosol	22.62	12.58
GSMUA_Achr11P...	Banana	cytosol	22.34	12.5
GSMUA_Achr10P...	Banana	extracellular, plasma membrane, plastid	22.62	12.43
GSMUA_Achr2P05250_001	Banana	cytosol	16.08	12.14
GSMUA_Achr4P12920_001	Banana	plastid	16.35	11.74
GSMUA_Achr9P22570_001	Banana	plastid	13.35	11.14
GSMUA_Achr2P15920_001	Banana	cytosol, peroxisome, plastid	20.16	11.08
GSMUA_Achr7P22290_001	Banana	cytosol	21.53	11.03
GSMUA_Achr10P...	Banana	cytosol, nucleus, peroxisome	20.71	10.64
GSMUA_Achr9P18840_001	Banana	plastid	17.71	8.9

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.1	Gene3D:3.80.10.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr6G18620_001	EnsemblPlants:GSMUA_Achr6P18620_001	EnsemblPlants:GSMUA_Achr6T18620_001	InterPro:IPR001611
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M0T860
PFAM:PF00646	PFAM:PF13516	PANTHER:PTHR44673	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI000296B80C	SEG:seg	:	:	:	:

Description

F-box protein SKP2A [Source:GMGC_GENE;Acc:GSMUA_Achr6G18620_001]

Coordinates

chr6:-:12860295..12866087

Molecular Weight (calculated)

39802.8 Da

IEP (calculated)

6.852

GRAVY (calculated)

0.005

Length

367 amino acids

Sequence
(BLAST)

001: MLGRSSESGD LDIWFKRLIV SGGGGKMEGA GDVMTGWKDL PMELLLRVLS PVDDRTVIVA SDVCTSWRDA LRLGITSISL SWCKYNMNSL VKSLAPKFVK
101: LQVLTLRQNY RPQLEDDAVE TVARYCHDLR DLDLSKGLKL SDRSLYALAD GCPHLTKLNI SGCEAFSDYA LVYLSSCCKN LKNLNLCGCS AAASDRALQA
201: ISFNCPKLQY LNLGWCEDIS DEGVTNLAVG CPDLRALDLC GCVHITDKSV IALANGCPHL RSLGLYYCQN ITDRAMYSLA NSRARNDTRM WQNSSHDQEG
301: LVNLNISQCT ALTPPAVQAV CDSFPGLHTC PGRHSLIISG CLSLTSVHCG CTFQTSRAGG ATLAGDA

Best Arabidopsis Sequence Match ( AT1G21410.1 )
(BLAST)

001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH

Arabidopsis Description

SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.