Factsheet for TraesCS3D01G402900.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G407700.1	Wheat	cytosol	98.68	98.68
TraesCS3B01G440600.2	Wheat	cytosol	97.63	97.38
HORVU3Hr1G091200.4	Barley	cytosol	96.58	87.38
Os01t0881900-01	Rice	cytosol	86.32	86.54
EES03986	Sorghum	cytosol	83.68	83.46
TraesCS1D01G265100.1	Wheat	cytosol	75.26	77.3
GSMUA_Achr10P...	Banana	cytosol	67.63	72.39
Zm00001d000224_P001	Maize	cytosol	81.84	71.82
PGSC0003DMT400063955	Potato	cytosol, extracellular, nucleus	61.05	68.04
KRH64574	Soybean	cytosol	57.37	67.91
GSMUA_Achr6P18620_001	Banana	cytosol	65.26	67.57
GSMUA_AchrUn_...	Banana	cytosol	63.95	66.03
CDX88336	Canola	cytosol	56.05	65.74
Bra016422.1-P	Field mustard	cytosol	60.79	65.44
Solyc04g063380.2.1	Tomato	cytosol	62.11	64.84
AT1G21410.1	Thale cress	cytosol	61.32	64.72
CDY67973	Canola	plasma membrane	61.58	64.64
CDX96592	Canola	cytosol	61.32	64.36
CDX87549	Canola	cytosol	59.21	63.38
Bra015699.1-P	Field mustard	cytosol	58.95	63.28
KRH53355	Soybean	cytosol	61.32	62.63
Bra003692.1-P	Field mustard	cytosol	58.68	62.12
CDX79184	Canola	cytosol	58.42	61.84
CDX68067	Canola	cytosol	58.42	61.84
KRH15905	Soybean	cytosol	60.26	61.73
KRH18090	Soybean	cytosol	60.26	61.07
AT1G77000.1	Thale cress	cytosol	57.63	60.83
CDY58589	Canola	extracellular	20.79	60.31
CDY58588	Canola	extracellular	20.26	58.33
VIT_18s0001g15010.t01	Wine grape	mitochondrion	65.26	57.94
TraesCS6D01G216400.1	Wheat	cytosol	20.53	18.7
TraesCS3D01G067600.2	Wheat	cytosol	15.53	16.86
TraesCS4D01G083300.1	Wheat	cytosol	16.84	16.58
TraesCS4D01G148000.1	Wheat	cytosol	23.95	14.56
TraesCS2D01G358900.1	Wheat	mitochondrion, plastid	16.05	13.83
TraesCS5D01G166300.1	Wheat	cytosol, mitochondrion, peroxisome, plastid	18.42	13.28
TraesCS5D01G103900.3	Wheat	cytosol	21.84	12.46
TraesCS7D01G373800.1	Wheat	cytosol	20.26	11.83
TraesCS6D01G169200.1	Wheat	cytosol	19.74	11.56
TraesCS5D01G155900.1	Wheat	mitochondrion	21.05	11.54

Protein Annotations

EnsemblPlants:TraesCS3D01G402900.2	EnsemblPlantsGene:TraesCS3D01G402900	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR44673
PANTHER:PTHR44673:SF2	PFAM:PF13516	SEG:seg	SMART:SM00367	SUPFAM:SSF52047	MapMan:19.2.2.8.1.4.1

Description

No Description!

Coordinates

chr3D:+:516999803..517002024

Molecular Weight (calculated)

40726.7 Da

IEP (calculated)

7.059

GRAVY (calculated)

0.031

Length

380 amino acids

Sequence
(BLAST)

001: MVNAQMLSGY LDNSFNALMV SGGGESGQPQ NGGTDTTLSG WKDLPMELLL RIISVAGDDR MAIVASGVCT GWRDALGWGA TSLSFSWCQD HMNELVISLA
101: HKFTKLQVLS LRQIKPQLED TAVEAVANSC HDLRELDLSR SFRLSDRSLY ALAHGCPHLT RLNISGCSNF SDAALIYLTS QCKNLKCLNL CGCVRAASDR
201: ALQAIACNCS QLQSLNLGWC DTVTDGGVTS LASGCPELRA VDLCGCVLIT DESVVALANG CPHLRSLGLY YCQNITDRAM YSLAENSRIR SKGMSWDAAK
301: SSRGRDDKDG LASLNISQCT ALTPPAVQAV CDSFPALHTC PERHSLIISG CLSLTAVHCA CAHHRHRAGA GRAILSNHAY

Best Arabidopsis Sequence Match ( AT1G21410.1 )
(BLAST)

001: MVMGGEASME LDQCFQKMKM EGISIKEWKD IPVELLMRIL SLVDDRNVIV ASGVCTGWRD AISFGLTRLR LSWCNNNMNS LVLSLVPKFV KLQTLNLRQD
101: KPQLEDNAVE AIANHCHELQ ELDLSKSLKI TDRSLYALAH GCPDLTKLNL SGCTSFSDTA IAYLTRFCRK LKVLNLCGCV KAVTDNALEA IGNNCNQMQS
201: LNLGWCENIS DDGVMSLAYG CPDLRTLDLC GCVLITDESV VALADWCVHL RSLGLYYCRN ITDRAMYSLA QSGVKNKPGS WKSVKKGKYD EEGLRSLNIS
301: QCTALTPSAV QAVCDSFPAL HTCSGRHSLV MSGCLNLTTV HCACILQAHR AHNAVPHPAH

Arabidopsis Description

SKP2AF-box protein SKP2A [Source:UniProtKB/Swiss-Prot;Acc:Q9LPL4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.