Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G278800.1 | Wheat | cytosol | 98.31 | 98.92 |
| TraesCS7A01G377500.1 | Wheat | cytosol | 97.85 | 98.15 |
| HORVU7Hr1G090240.1 | Barley | cytosol | 80.18 | 96.85 |
| HORVU1Hr1G089690.1 | Barley | cytosol, extracellular, mitochondrion | 36.1 | 88.35 |
| Os06t0605900-01 | Rice | cytosol | 78.49 | 81.5 |
| EER90022 | Sorghum | cytosol, plastid | 75.88 | 78.91 |
| HORVU5Hr1G029670.1 | Barley | mitochondrion | 61.44 | 77.97 |
| HORVU5Hr1G000950.4 | Barley | plastid | 52.38 | 76.29 |
| TraesCS6D01G169200.1 | Wheat | cytosol | 69.74 | 69.95 |
| Zm00001d000408_P001 | Maize | cytosol | 74.5 | 65.28 |
| Zm00001d036880_P003 | Maize | cytosol | 73.43 | 64.95 |
| GSMUA_Achr6P05220_001 | Banana | cytosol | 52.23 | 51.99 |
| GSMUA_Achr4P30680_001 | Banana | cytosol | 51.15 | 51.07 |
| GSMUA_Achr9P28510_001 | Banana | cytosol, nucleus, peroxisome | 50.54 | 50.31 |
| PGSC0003DMT400007545 | Potato | cytosol | 48.69 | 49.76 |
| GSMUA_Achr10P... | Banana | extracellular, plasma membrane, plastid | 51.0 | 49.7 |
| KRH03688 | Soybean | cytosol | 48.08 | 48.98 |
| Solyc12g009560.1.1 | Tomato | cytosol | 47.62 | 48.67 |
| KRH20255 | Soybean | cytosol | 47.31 | 48.2 |
| PGSC0003DMT400079445 | Potato | cytosol, nucleus, peroxisome | 47.16 | 47.82 |
| VIT_11s0016g05410.t01 | Wine grape | cytosol | 48.69 | 47.81 |
| Solyc07g008250.2.1 | Tomato | cytosol, nucleus, peroxisome | 46.54 | 47.27 |
| GSMUA_Achr2P15920_001 | Banana | cytosol, peroxisome, plastid | 48.39 | 47.16 |
| KRH15886 | Soybean | cytosol | 46.54 | 47.05 |
| KRH62989 | Soybean | cytosol | 46.7 | 46.77 |
| KRH05167 | Soybean | cytosol | 43.47 | 46.39 |
| VIT_04s0008g05470.t01 | Wine grape | cytosol | 47.31 | 46.18 |
| PGSC0003DMT400040977 | Potato | nucleus | 47.16 | 45.89 |
| Solyc08g060810.2.1 | Tomato | plastid | 46.85 | 45.86 |
| AT2G25490.1 | Thale cress | plastid | 44.24 | 45.86 |
| Bra036542.1-P | Field mustard | cytosol | 43.32 | 45.78 |
| CDX87090 | Canola | cytosol | 43.01 | 45.45 |
| KRH52439 | Soybean | cytosol, nucleus, peroxisome | 44.39 | 45.3 |
| CDY35358 | Canola | cytosol | 43.32 | 45.26 |
| Bra034254.1-P | Field mustard | cytosol | 43.16 | 45.18 |
| CDY19807 | Canola | cytosol | 42.7 | 45.13 |
| KRH61771 | Soybean | cytosol | 43.93 | 44.97 |
| KRH04870 | Soybean | cytosol | 18.74 | 44.85 |
| CDX76980 | Canola | cytosol | 41.17 | 44.74 |
| AT5G25350.1 | Thale cress | cytosol | 42.7 | 44.62 |
| CDX88173 | Canola | cytosol | 42.4 | 44.37 |
| Bra009835.1-P | Field mustard | cytosol | 42.09 | 44.05 |
| CDX80503 | Canola | cytosol | 41.94 | 43.96 |
| PGSC0003DMT400094835 | Potato | cytosol | 15.82 | 42.04 |
| PGSC0003DMT400042949 | Potato | cytosol | 34.72 | 40.94 |
| PGSC0003DMT400089433 | Potato | mitochondrion | 28.11 | 39.87 |
| Solyc06g030620.1.1 | Tomato | cytosol | 11.98 | 38.81 |
| Solyc06g049010.1.1 | Tomato | plastid | 36.87 | 38.71 |
| Solyc06g030610.1.1 | Tomato | cytosol | 15.21 | 36.13 |
| TraesCS3D01G067600.2 | Wheat | cytosol | 12.75 | 23.71 |
| TraesCS6D01G216400.1 | Wheat | cytosol | 14.9 | 23.26 |
| TraesCS4D01G148000.1 | Wheat | cytosol | 22.27 | 23.2 |
| TraesCS5D01G103900.3 | Wheat | cytosol | 23.2 | 22.67 |
| TraesCS2D01G358900.1 | Wheat | mitochondrion, plastid | 15.05 | 22.22 |
| TraesCS1D01G265100.1 | Wheat | cytosol | 12.14 | 21.35 |
| TraesCS4D01G083300.1 | Wheat | cytosol | 12.6 | 21.24 |
| TraesCS3D01G402900.2 | Wheat | cytosol | 11.83 | 20.26 |
| TraesCS5D01G166300.1 | Wheat | cytosol, mitochondrion, peroxisome, plastid | 16.13 | 19.92 |
| TraesCS5D01G155900.1 | Wheat | mitochondrion | 20.74 | 19.48 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G373800.1 | EnsemblPlantsGene:TraesCS7D01G373800 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR44327 |
| PANTHER:PTHR44327:SF3 | PFAM:PF13516 | SEG:seg | SMART:SM00367 | SUPFAM:SSF52047 | MapMan:11.5.2.6 |
| MapMan:19.2.2.8.1.4.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:484361674..484363753
Molecular Weight (calculated)
68308.1 Da
IEP (calculated)
6.956
GRAVY (calculated)
0.267
Length
651 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPFHDFRDG GLLVLDPAAA MFGGVRQRKR ARVTAVPPCV FAAAAAEEEA LRAAPAAKRQ RLREAPTLDA LPDGCLFEIL RRVQGARARG ASSCVSRRWL
101: ALLGGIRASE IKRAQAPAVP DLNQVFVCDD EDEAEAASAR PGRSERTLEG EGATDVALTA AAVADGLRGS LESVVVRGSH PTRGVTDSGL SAVARGCPSL
201: RSLALWDVPQ VTDAGLAEIA AGCPSLEKLD ITGCPLVTDK GLVAVAQGCP DLKTLTIEAC SGVANEGLKA IGRCCSKLQA VNIKNCAYVG DQGVSGLICS
301: ATASLAKVCL QGLSITDASL AVIGYYGKAI TNLTLTRLSA VGERGFWVMA NALGLQKLRC MSITSCPGVT ELALVSIAKF CPSLKQLYLR KCSQISDGLL
401: KDFAEAAKVL ENLQIEECNR ITLMGILSFL LNCSPKFKTL SLVKCTGIKD ICSAPAQLPV CKSLRSLTIK QCPGFTDASL AVVGMICPHL ENLDLSGLGA
501: VTDDGLLPLI RSSESGLVHV DLNGCENLTD AAISALVKAH GTSLAHLSLE GCSKISDASL FAISESCSEL AELDLSNCMV SDYGVAVLAS AERLKLRVLS
601: LSGCLKVTPK SVPFLGSMPA SLEGLNLQFN FIGNHNIASL EKQLWWCDIL A
101: ALLGGIRASE IKRAQAPAVP DLNQVFVCDD EDEAEAASAR PGRSERTLEG EGATDVALTA AAVADGLRGS LESVVVRGSH PTRGVTDSGL SAVARGCPSL
201: RSLALWDVPQ VTDAGLAEIA AGCPSLEKLD ITGCPLVTDK GLVAVAQGCP DLKTLTIEAC SGVANEGLKA IGRCCSKLQA VNIKNCAYVG DQGVSGLICS
301: ATASLAKVCL QGLSITDASL AVIGYYGKAI TNLTLTRLSA VGERGFWVMA NALGLQKLRC MSITSCPGVT ELALVSIAKF CPSLKQLYLR KCSQISDGLL
401: KDFAEAAKVL ENLQIEECNR ITLMGILSFL LNCSPKFKTL SLVKCTGIKD ICSAPAQLPV CKSLRSLTIK QCPGFTDASL AVVGMICPHL ENLDLSGLGA
501: VTDDGLLPLI RSSESGLVHV DLNGCENLTD AAISALVKAH GTSLAHLSLE GCSKISDASL FAISESCSEL AELDLSNCMV SDYGVAVLAS AERLKLRVLS
601: LSGCLKVTPK SVPFLGSMPA SLEGLNLQFN FIGNHNIASL EKQLWWCDIL A
001: MSQIFSFAGE NDFYRRGAIY PNPKDASLLL SLGSFADVYF PPSKRSRVVA PTIFSAFEKK PVSIDVLPDE CLFEIFRRLS GPQERSACAF VSKQWLTLVS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS
101: SIRQKEIDVP SKITEDGDDC EGCLSRSLDG KKATDVRLAA IAVGTAGRGG LGKLSIRGSN SAKVSDLGLR SIGRSCPSLG SLSLWNVSTI TDNGLLEIAE
201: GCAQLEKLEL NRCSTITDKG LVAIAKSCPN LTELTLEACS RIGDEGLLAI ARSCSKLKSV SIKNCPLVRD QGIASLLSNT TCSLAKLKLQ MLNVTDVSLA
301: VVGHYGLSIT DLVLAGLSHV SEKGFWVMGN GVGLQKLNSL TITACQGVTD MGLESVGKGC PNMKKAIISK SPLLSDNGLV SFAKASLSLE SLQLEECHRV
401: TQFGFFGSLL NCGEKLKAFS LVNCLSIRDL TTGLPASSHC SALRSLSIRN CPGFGDANLA AIGKLCPQLE DIDLCGLKGI TESGFLHLIQ SSLVKINFSG
501: CSNLTDRVIS AITARNGWTL EVLNIDGCSN ITDASLVSIA ANCQILSDLD ISKCAISDSG IQALASSDKL KLQILSVAGC SMVTDKSLPA IVGLGSTLLG
601: LNLQQCRSIS NSTVDFLVER LYKCDILS
Arabidopsis Description
EBF1EIN3-binding F-box protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKK0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.